Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1436g00007 ATGGCTCTGGAAGCTCTCAACTCACCCACCACCGCTACCCCACCTTTCACCTTCGATGATCCAAGCTTGAAGCGAAAGCGTTCCAAGCGTTCACGCTTGGACCACCCTTCATGCACCGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCAAGGCAGGACCACCACCACCACCACCGCTTTCAACCGCCACACTCATCCTCTCCCTGACTCACCGCCACAACCGACCACCGCTCCCTCCAGTGCCCCCAAGCTTAGTTACAAATGTTCCGTGTGTAACAAAGCTTTCCCCTCTTACCAAGCACTTGGTGGACACAAGGCCAGTCACCGGAAACTATCCGCCGGCGGCGATGATCAATCCACGTCCTCAGCCGCCACAACTAGTTCTGCTAACACCGCCACCGCCGCCGCATCCAACGGCGGAGGTAGGGTTCACGAGTGTTCCATCTGCCACAAATCCTTTCCCACCGGACAGGCCTTGGGGGGACACAAACGTTGCCACTACGAAGGTGGTTCTGGTGCTGGTGGTAGCGGCGGTGGTGGCAGCGCTATCACCGCCTCGGAAGGTGTTGGATCGACCCACACCATAAGCCACAGCCACCGTGACTTCGATCTAAACATCCCTGCTTTTCCAGACCTTTCAACCAAGGTCGGAGAAGACGAGGTTGAAAGTCCTCTGCCAGTGATGAAGAAGCCCCGTCTTTTCGTGTTTCCCAAGATCGAAATCCCTCAAATCCAATGA 747 0.5649 MALEALNSPTTATPPFTFDDPSLKRKRSKRSRLDHPSCTEEEYLALCLIMLAQGRTTTTTTAFNRHTHPLPDSPPQPTTAPSSAPKLSYKCSVCNKAFPSYQALGGHKASHRKLSAGGDDQSTSSAATTSSANTATAAASNGGGRVHECSICHKSFPTGQALGGHKRCHYEGGSGAGGSGGGGSAITASEGVGSTHTISHSHRDFDLNIPAFPDLSTKVGEDEVESPLPVMKKPRLFVFPKIEIPQIQ 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1436g00007 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Gabi1436g00007 248 SUPERFAMILY beta-beta-alpha zinc fingers 89 169 IPR036236 -
Gabi1436g00007 248 MobiDBLite consensus disorder prediction 1 17 - -
Gabi1436g00007 248 MobiDBLite consensus disorder prediction 62 84 - -
Gabi1436g00007 248 Pfam C2H2-type zinc finger 146 170 - -
Gabi1436g00007 248 Pfam C2H2-type zinc finger 89 113 - -
Gabi1436g00007 248 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
Gabi1436g00007 248 SMART c2h2final6 147 169 IPR013087 -
Gabi1436g00007 248 SMART c2h2final6 89 111 IPR013087 -
Gabi1436g00007 248 MobiDBLite consensus disorder prediction 20 35 - -
Gabi1436g00007 248 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Gabi1436g00007 248 Gene3D Classic Zinc Finger 86 169 - -
Gabi1436g00007 248 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 25 210 IPR044653 GO:0003700
Gabi1436g00007 248 MobiDBLite consensus disorder prediction 111 144 - -
Gabi1436g00007 248 MobiDBLite consensus disorder prediction 1 35 - -
Gabi1436g00007 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 169 IPR013087 -
Gabi1436g00007 248 MobiDBLite consensus disorder prediction 116 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1436g00007 Gabi-Chr1436 125379 126685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1436g00007 1 244 C2H2 Transcription Factor Family AT1G27730 52.107 4.57e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi1436g00007 zf-C2H2_6 5.2e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1436g00007 - - gmx:547886 292.737