Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1436g00001 ATGTTAAAATGTTATCCCCTCTCTCCATTCCCTCCCATATATTACGCATTTATCAACTCTCATCTCTCACTCTCTCGCCCTCCCTTCTTCACCTCGACCCGAATCCGAACTCGAACCGGAACCCGAACCCGAACCTACCTCGCTTCGGATCCTAAATCGGGTACAGTTATGGGAACGGAGAGTTACACTTACATGGGACGAAGCTTGAGCGAACTGAGCATCAACGATGATTCATCTTCTTCAGCTTTCAGCGACTGCAACAGTGACAGATCTGGTGAATTCACCACCGCTTCTTCACAATCCCGACGACTCCTCATCGCTTGCGCTTCCGAGAATTCCGACGATTTCATCCGTCAACTCGTTTCCGATCTCCACTCCTCTTCCATCGACGATCAAAAACAAGCCGCCATGGAAATCCGATTACTCGCCAAGAACAAACCAGAAAATCGCATCAAAATCGCCAAAGCAGGCGCGATTCAACCTTTGATTTCTCTTATCTGTTCACAAGACCTTCAACTTCAAGAATACGGCGTCACCGCGATTTTGAATCTCTCGTTATGCGACGAGAACAAGGAGGTTATTGCTTCGTCGGGAGCGATTAAGCCTCTGGTTCGAGCTCTCGGCGCGGGGACATCAACGGCGAAGGAGAACGCGGCGTGCGCGCTGCTTCGTCTCTCGCAGGTGGAAGAGAACAAGGCGGCGATTGGGCGTTCCGGCGCCATTCCGCTCCTGGTGAACCTTCTACAAGGCGGCGGTATCCGCGGGAGGAAGGACGCGTCGACGGCGCTGTACTCGCTGTGTACGGTGAGGGAGAACAAGATCAGGGCGGTGAAGTCGGGGATTATGAAGGTGCTAGTTGAGTTGATGGCGGATTTCGAATCGAACATGGTGGACAAGTCGGCGTACGTGGTGAGCGTGCTGGTTTCTATGCCGGAGGCGAGGGCGGCGCTTGTGGAGGAAGGCGGTGTTCCGGTGCTGGTGGAGATCGTTGAGGTTGGGTCGCATAGACAGAAAGAAATCGCGGTGGTTATTCTGTTACAGGTCTGCGAGGATAACGGCGCTTATCGCACCATGGTGGCTCGAGAAGGTGCGATTCCACCTTTGGTTTCTTTATCCCAATCCGGCACCAATCGCGCCAAGCAAAAGGCAGAGAAACTAATCGAGCTTCTGCGGCAACCAAGATCCGGCAACGCTGCTTCCCGGACTTCAGAAGTGGCGGCGTAA 1224 0.5343 MLKCYPLSPFPPIYYAFINSHLSLSRPPFFTSTRIRTRTGTRTRTYLASDPKSGTVMGTESYTYMGRSLSELSINDDSSSSAFSDCNSDRSGEFTTASSQSRRLLIACASENSDDFIRQLVSDLHSSSIDDQKQAAMEIRLLAKNKPENRIKIAKAGAIQPLISLICSQDLQLQEYGVTAILNLSLCDENKEVIASSGAIKPLVRALGAGTSTAKENAACALLRLSQVEENKAAIGRSGAIPLLVNLLQGGGIRGRKDASTALYSLCTVRENKIRAVKSGIMKVLVELMADFESNMVDKSAYVVSVLVSMPEARAALVEEGGVPVLVEIVEVGSHRQKEIAVVILLQVCEDNGAYRTMVAREGAIPPLVSLSQSGTNRAKQKAEKLIELLRQPRSGNAASRTSEVAA 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1436g00001 407 SMART arm_5 228 268 IPR000225 GO:0005515
Gabi1436g00001 407 SMART arm_5 146 186 IPR000225 GO:0005515
Gabi1436g00001 407 SMART arm_5 351 392 IPR000225 GO:0005515
Gabi1436g00001 407 SMART arm_5 310 350 IPR000225 GO:0005515
Gabi1436g00001 407 SMART arm_5 269 309 IPR000225 GO:0005515
Gabi1436g00001 407 SMART arm_5 187 227 IPR000225 GO:0005515
Gabi1436g00001 407 FunFam RING-type E3 ubiquitin transferase 106 396 - -
Gabi1436g00001 407 Gene3D - 254 389 IPR011989 -
Gabi1436g00001 407 Pfam Armadillo/beta-catenin-like repeat 188 226 IPR000225 GO:0005515
Gabi1436g00001 407 Pfam Armadillo/beta-catenin-like repeat 147 185 IPR000225 GO:0005515
Gabi1436g00001 407 Pfam Armadillo/beta-catenin-like repeat 230 267 IPR000225 GO:0005515
Gabi1436g00001 407 Gene3D - 93 253 IPR011989 -
Gabi1436g00001 407 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 157 199 IPR000225 GO:0005515
Gabi1436g00001 407 PANTHER U BOX DOMAIN-CONTAINING 116 391 - -
Gabi1436g00001 407 SUPERFAMILY ARM repeat 113 388 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1436g00001 Gabi-Chr1436 11650 13620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1436g00001 52 399 U-box Gene Family AT2G23140 46.023 3.04e-87 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1436g00001 - - gmx:100797550 560.451