Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1434g00027 ATGGCGCAAGGGTCGCAGAAGAACACGGTGTACGTGGGAGGGTTGGCGGAGGAGGTGAACGAGTCGATATTGCACGCGGCGTTCATACCCTTCGGTGACATCAAGGACGTGAAGACGCCGCTCGACCAGGCCACCCAGAAGCACCGTTCATTCGGTTTCATCACCTTCCTCGAGAGGGAAGACGCCGCCGCCGCCATGGACAACATGGACGGCGCAGAGCTCTACGGCCGCGTCCTCACCGTCAATTACGCCCTCCCTGAGAAGATCAAGGGTGGCGAGATTGGCTGGGCTGCTCAGCCAATTTGGGCGGATGCTGATACTTGGTTTGAGCGGCAGCAGCAAGAGGAGGAAATGCGTCGAATTGAAACGGAGAATCGCGCTGCAATGCAGGCTGCAGAAGACTTGCACAGGAAACAATTAACCGAAGAGCGAGAAGGAGAAAAGGAAGAGGAAATTGAGATCAAAGATGATCCTATGGGAAAGGCTGAAGCAGAGGTTCTTCAACAGAATAACCAATGA 519 0.5491 MAQGSQKNTVYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFITFLEREDAAAAMDNMDGAELYGRVLTVNYALPEKIKGGEIGWAAQPIWADADTWFERQQQEEEMRRIETENRAAMQAAEDLHRKQLTEEREGEKEEEIEIKDDPMGKAEAEVLQQNNQ 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1434g00027 172 MobiDBLite consensus disorder prediction 129 172 - -
Gabi1434g00027 172 FunFam Peptidyl-prolyl cis-trans isomerase 1 153 - -
Gabi1434g00027 172 Coils Coil 111 157 - -
Gabi1434g00027 172 PANTHER ATPASE E1 3 171 - -
Gabi1434g00027 172 SMART rrm1_1 9 82 IPR000504 GO:0003723
Gabi1434g00027 172 CDD RRM_PPIE 10 84 IPR034168 GO:0003723
Gabi1434g00027 172 SUPERFAMILY RNA-binding domain, RBD 5 91 IPR035979 GO:0003676
Gabi1434g00027 172 Gene3D - 1 151 IPR012677 -
Gabi1434g00027 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Gabi1434g00027 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Gabi1434g00027 172 MobiDBLite consensus disorder prediction 129 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1434g00027 Gabi-Chr1434 211402 212776 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1434g00027 1 86 Eukaryotic Initiation Factors Gene Family AT3G11400 36.047 1.10e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1434g00027 - - ccaj:109797476 291.197