Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1434g00019 ATGCAAGGATCGCAGAAGAACACGGTGTACGTGGGAGTGTTGGCGGAGGAGGTGAACGAGTCGATATTGCACGCGGCGTTCATACCCTTCGGTGACATCAAGGACGTGAAGACGCCGCTCGACCAGGCCACCCAGAAGCACCGTTCATTCGGTTTCATCACCTTCCTCGAGAGGGAAGACGCCGCCGCCGCCATGGACAACATGGACGGCGCCGAGCTCTACGGCCGCGTCCTCACCGTCAATTATGCCCTCCCTGAGAAGATCAAGGGTGGCGAGATAGGCTGGGCTGCTCAGCCAATTTGGGCGGATGCTGATACTTGGTTTGAGCGGCAGCAGCAAGAGGAGGAAATGCGTCGAATTGAAATGGAGAATCGCGCTGCAATGCAGGCTGCAGAAGACTTGCACAGGAAACAATTAACCGAAGAGCGAGAAGGAGAAAAGGAAGAGGAAATTGAGATCAAAGATGATCCTATGGGAAAGGCTGAAGCAGAGGTTCTTCAACAGAATAACCAATGA 516 0.5407 MQGSQKNTVYVGVLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFITFLEREDAAAAMDNMDGAELYGRVLTVNYALPEKIKGGEIGWAAQPIWADADTWFERQQQEEEMRRIEMENRAAMQAAEDLHRKQLTEEREGEKEEEIEIKDDPMGKAEAEVLQQNNQ 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1434g00019 171 CDD RRM_PPIE 9 83 IPR034168 GO:0003723
Gabi1434g00019 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Gabi1434g00019 171 SMART rrm1_1 8 81 IPR000504 GO:0003723
Gabi1434g00019 171 MobiDBLite consensus disorder prediction 124 144 - -
Gabi1434g00019 171 Gene3D - 1 154 IPR012677 -
Gabi1434g00019 171 MobiDBLite consensus disorder prediction 124 171 - -
Gabi1434g00019 171 FunFam Peptidyl-prolyl cis-trans isomerase 1 152 - -
Gabi1434g00019 171 PANTHER ATPASE E1 4 170 - -
Gabi1434g00019 171 SUPERFAMILY RNA-binding domain, RBD 4 90 IPR035979 GO:0003676
Gabi1434g00019 171 Coils Coil 110 156 - -
Gabi1434g00019 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1434g00019 Gabi-Chr1434 189321 190441 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1434g00019 7 85 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 4.18e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1434g00019 - - ccaj:109797476 280.796