Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1433g00005 ATGTCGAGCTCAAGGAGAAGCAAGGGTCGTCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACCTCCAAGTCACATTCTCAAAGCGTCGTAGTGGGCTTTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCTGATGTTGCTCTCGTTGTGTTCTCACCTGGTGAGAAAGTCTTTTCCTTTGGCCACCCCAATGTTGATGCTGTGATAGATCGATATCTGATGCGAGCACCACAACAAAACTCTAGCACCATGCAGTTCATTGAGGCTCACCGCAGTGCCAACGTGCGTGAGCTCAATGCACAACTCACTCTGATCAGCAACCAGCTTGACACTGAGAGGAAGCGCTGCGAAGAGGTTAACCGTATGCGCAAGGCAACTCAGGCTCAGTTTTGGTGGGCTTTTCCCATTGAGGACATGAATAGGGCTCAACTTGATCAATTCAAAGTGGCCTTGGAGGAGCTCAAGAAACATATCACTCGCCATGCTGATAGGCTTATCATTCAGAGTGCTACTAACCCAACTCAGTTTTTTGTAGGCAACTCCTCTTCCAACCCAATGCATCAGCCACCTCCACCACCACCTCAGGTGTTTCTGCCACACATGATTCAGCCACCAATGCTTCAGAACCCTATGCTGCAGAATCATATGTTTGATGGAAGCATGATGCGCCACCATGGCTTTAACAACATGGGAGGAGGGTATGGACCTGCTGGATTTTTTTGA 735 0.4857 MSSSRRSKGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDAVIDRYLMRAPQQNSSTMQFIEAHRSANVRELNAQLTLISNQLDTERKRCEEVNRMRKATQAQFWWAFPIEDMNRAQLDQFKVALEELKKHITRHADRLIIQSATNPTQFFVGNSSSNPMHQPPPPPPQVFLPHMIQPPMLQNPMLQNHMFDGSMMRHHGFNNMGGGYGPAGFF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1433g00005 244 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Gabi1433g00005 244 MobiDBLite consensus disorder prediction 1 20 - -
Gabi1433g00005 244 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Gabi1433g00005 244 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Gabi1433g00005 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Gabi1433g00005 244 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Gabi1433g00005 244 Coils Coil 148 168 - -
Gabi1433g00005 244 Coils Coil 99 133 - -
Gabi1433g00005 244 PANTHER MADS BOX PROTEIN 10 165 - -
Gabi1433g00005 244 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Gabi1433g00005 244 Gene3D - 88 179 - -
Gabi1433g00005 244 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Gabi1433g00005 244 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Gabi1433g00005 244 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Gabi1433g00005 244 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1433g00005 Gabi-Chr1433 57289 58023 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1433g00005 5 188 Type I MADS-box Gene Family AT5G60440 56.150 3.04e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi1433g00005 SRF-TF 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1433g00005 - - gmx:100780445 326.25