Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1433g00004 ATGTCATCGAAGAAGAAGTCTAGTTTAGGTCGGCAAAAGATCCCTATTGAGAAAATAGGGAAAAAAAGTCATCTGCAAGTTACATTCTCTAAGCGTCGTTCAGGACTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGGGTAGATATTGCAATTGTAGTTTTCTCTCCAGCTGATAAGGCTTTCTCTTTTGGCCATCCAGAAGTTGAGTCCATCATTGATCGTTATCTGACTCGAAACCCTCCACAAGAGTCTAGTGCTCACCTGCTTGTTGAGGCTCATCGAAATGCAAATGTTCGTGATCTCAACATGCAGCTGACTCAGCTTCTTAGCCATTTGGAGATTGATAAGAAGCAAGGAGAAGAGCTTGATCATGTGAGGAAAGCTAGGCAGCGCCAGTTTTGGTGGGAAAGCCCTGTTGATCAGCTTGGCTTGCATGAATTGCTTCAATTAAAGGGTTCTATTGAGGAGCTGAAGAAGGTTGTTGGAAAACATGCTTCCAAATTCATGATGGACCAAAACAATATATCTCTACCAATTATTGGGGCTAATGGCTTTGGACGTTATGATGCTTTTGAGAACAAATATGCTGCTGGGATTAATATTGCTTCAACACCTCCCAATGCCGGTTTTCGGCATGGGTATCTTTGA 654 0.4266 MSSKKKSSLGRQKIPIEKIGKKSHLQVTFSKRRSGLFKKASELCTLCGVDIAIVVFSPADKAFSFGHPEVESIIDRYLTRNPPQESSAHLLVEAHRNANVRDLNMQLTQLLSHLEIDKKQGEELDHVRKARQRQFWWESPVDQLGLHELLQLKGSIEELKKVVGKHASKFMMDQNNISLPIIGANGFGRYDAFENKYAAGINIASTPPNAGFRHGYL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1433g00004 217 CDD MADS_MEF2_like 10 79 IPR033896 GO:0000977|GO:0045944
Gabi1433g00004 217 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Gabi1433g00004 217 Gene3D - 89 179 - -
Gabi1433g00004 217 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Gabi1433g00004 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Gabi1433g00004 217 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Gabi1433g00004 217 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Gabi1433g00004 217 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Gabi1433g00004 217 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Gabi1433g00004 217 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Gabi1433g00004 217 SUPERFAMILY SRF-like 10 86 IPR036879 GO:0003677|GO:0046983
Gabi1433g00004 217 PANTHER MADS BOX PROTEIN 11 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1433g00004 Gabi-Chr1433 51742 52449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1433g00004 6 184 Type I MADS-box Gene Family AT5G60440 53.846 5.34e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi1433g00004 SRF-TF 3.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1433g00004 - - gmx:100793705 324.709