Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1430g00017 ATGTCTACAAGCGAGATCACAAAAATGGAAGAAGGTGGACTCAAACCGCAAATGGATTCTGATTCTGGGTTTTGCGGTTCTGCTGAGGTAACTCAAGTCATACAGAAGGTAATTGCAGAGTTAATAGGGACATACTTCCTAGTATTTGCAGGGTGTTGCTCTGTGGTTTTGAATAAAATTGAAGAGAGTAAAGGGACAATAACGTTCCCTGGAATTTGTATTGTGTGGGGTCTATCAGTGATGATTTTGGTTTATGCTCTTGGTCACATCTCCGGTGCTCATTTCAATCCTGCAGTCACTGTCAGCTTCGCCATCTATCGTCATTTCCCTCTCAAACAGGTGCCTATGTATCTTATTGCGCAGGCGCTAGGATCTATCCTTGGTAGTGGGACATTGCGCCTTCTGTTTGATCTAGATGAAAATTCTTATTTTGGAACGGTACCATCAGGATCTCATGTTCAATCTCTTGTCTTCGAGATCCTCACATCGTTTCTCTTGATGTTTGTTGTCTCTGCAGTTTCCACGGACAATCGAGCAATTGGAGAATTGGCAGGGATTGCTGTTGGTATGACTGTCTTAATAGATGTCTTCATTGCCGGGCCTGTGTCAGGAGCGTCTATGAACCCAGCCAGAAGCCTTGGACCAGCTTTGGTGATGCACGTTTACGATGGATTCTGGATTTATATAGTTGGACCCTTTCTTGGCGCCATATTAGGTGCTTCAGCCTACAATCTGATAAGATTTACTGACAAACCACTCAGAGAAATCAGTAAAAGCAGTAGCTTCCTCAAAAGCGTGTCCAGAGCAAGTTTTCAATAG 819 0.4359 MSTSEITKMEEGGLKPQMDSDSGFCGSAEVTQVIQKVIAELIGTYFLVFAGCCSVVLNKIEESKGTITFPGICIVWGLSVMILVYALGHISGAHFNPAVTVSFAIYRHFPLKQVPMYLIAQALGSILGSGTLRLLFDLDENSYFGTVPSGSHVQSLVFEILTSFLLMFVVSAVSTDNRAIGELAGIAVGMTVLIDVFIAGPVSGASMNPARSLGPALVMHVYDGFWIYIVGPFLGAILGASAYNLIRFTDKPLREISKSSSFLKSVSRASFQ 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1430g00017 272 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1430g00017 272 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1430g00017 272 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1430g00017 272 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1430g00017 272 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1430g00017 272 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1430g00017 272 MobiDBLite consensus disorder prediction 1 21 - -
Gabi1430g00017 272 NCBIfam MIP family channel protein 39 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1430g00017 272 PANTHER AQUAPORIN NIP2-1 19 264 IPR034294 -
Gabi1430g00017 272 CDD MIP 35 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1430g00017 272 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Gabi1430g00017 272 Pfam Major intrinsic protein 31 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1430g00017 272 Gene3D Glycerol uptake facilitator protein. 8 258 IPR023271 -
Gabi1430g00017 272 SUPERFAMILY Aquaporin-like 32 256 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1430g00017 Gabi-Chr1430 173621 176039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1430g00017 5 267 Major Intrinsic Protein MIP AT5G37810 61.364 2.09e-116 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1430g00017 K09874 - gmx:100819179 395.201