Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1430g00008 ATGGAGAATTATCGTGATGGAGTTGATGAAGGGAATGATCTGGATTCTATAGATTTTGATACCCTGATCAAGAATCTTGAGGATTTGACAAAAGGCAATGATACATTAATCCCAGAGTTTGACTATCAGCAAAAGAGACGTGTTGGCTATAAAGCAGTAAAGAGTGCTTCATCTGGGGTGGTAATAGTTGATGGTACATATGCATTACATGCAAAACTGCGGTCTTTACTGGATATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCTTGCTTTCTAAAGTTCGTTATGACATTGGAGATTCTTGTTCGCTGGATTACCTTATAGATAGCATTTTCCCGTTGTTTAGAAAGCACATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAATAACAGCTTTGTCTCATCATTTAGAGAGGCAATCTACAAGGTTAAATGCAGAAGTGAGTCTTCAGATGGACATTCAGGTTCTTCCTTTCAAGGAAATGAAGCCCAGACAGATAATTTTATTGAAATGTACCTTAGACCGCCTTCAGCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATTTATCCCTTGGTGACCAGAGGATTGTTGACAAAAATTTCATTATCAGGCCCAAAGCTGAGTTTGAGGTTGGACGAATGACATTGGGTGGATTGCTGGCTCTTGGATACAACGTTGTGGTTAGTTATAAACGTGCATCCACGACCGTCAATAATGGCAAGGTTTCAGTGTCTTTTGAAACCATTGATGTTGTCAGTGAGACATTCATGGTGATGAGAGGAACTAATAGGAAGACTGTTGGAACAGAAGCATTGAGGATGCGTATCAATGGACCTTGGATTACTAAATCATATCTGGAAATGATTCTTGAGAGAAAAGGTGTACCTCGTCTCAGCACACCACCTCTTGTGTCTAATACAGCTTTGCCTGGTAGTCAAGAAATGGCAATCATTGCACCAAAGCCAATTCGTGTTACTCCTAAACTTGTTACTGGGCTTGAGGATCTATCTCAGCCGTGGACTCGATCCCCAACAAAATCTAAAATAGAACCTGTTGTTGCTACATGGCATTTCATATCTTCAGATTCCTCCCAGCCAGATAACTCAGTCCTAGATCCTTCATCTTTCAGGGACACCATTAGGCTTGCTCCGATGCCTGATTCATATGACTTGGATAGGGGATTGCTTTTGGCAGTTCAAGCAATACAAGCTTTGTTGGAGAATAAAGGTGTCCCAGTCATAGTCGGAATTGGAGGTCCAAGTGGGTCTGGAAAGACTAGTTTGGCTCATAAAATGGCAAACATCATTGGTTGTGAAGTTATTTCCCTGGAAAGCTATTATAAACAAGTAAAGGATTTTAAATATGATGACTTCAGCTCTCTTGATTTATCTTTGCTATCAAAGAATATTGATGACATAAGAAATGTTCGAAGAACAAAAGTACCTATATTTGACGTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGCGTCTATGCTTTGCATCCTGATATCCGAATATCACTTGACTTGTGGATTGCTGTTGTAGGAGGTGTTCATTCACATTTGATTTCAAGAGTTCAAAGGGATAAGAGTAGAGTGGGATGTTTTATTGCCCAAAATGAGATCATGATGACAGTGTTTCCTATGTTCCAGCAGCTTATTGAACCTCATCTTGTTCATGCACACCTTAAAATTCGAAATGACTTTGACCCTGTGCTTTCTCCGGAGAGTTCATTGTTTGTATTGAAGAGTAACAAAAAAGTCGCTTATGAAGATATTCTTGCAATTCTTGATCCAGCAAAATTTTGCAGTTCAGTGCAGAAATTTATTGATATTTATATAAGGCTTCCTGGGATACCTTCTAATGGGCAGTTGACAGATAGTGATTGCATTCGAGTCAGAATATGTGAAGGCAGATTTGCATTGCTGATACGTGAGCCTATCAGAGAAGGAAACTTCATCATTCAGCCTAAAGTGGATTTTGATATTAGCATCAGTACGGTTGCTGGTCTTCTAAATCTTGGGTATCAAGCAGTTGCTTATATTGAAGCGTCTGCATTCATCTATCAGGATGGAAAGATTCTAATTGAGGTTGATCATCTACAAGATGTCTCTGGCCCATACATTCAGATAAAGGGTGTTAATAAAGATGCGGTGGCAGCAGCAGGTTCAATGCTTAAATTGGATGGTTCATATACTACTAAGAGTTATCTTGAAATAATTTTGGAAAGACTACCAGCAATAGAGAGAACTTCTGGTGGGATTCCTTCTCAGCAATCAGCAAGACTGCTAGAGCTTGTTGAATTTATTCAGTCTCAGGGATGTAGCTCTGCTTCAGAGTCGTCACCAAGTAGGGTAGACTCTCCAATTGAAGGGATTATTGAGGAGATGCAATCAAGGATTAGAAGGCTTGAAAGGTGGCTTGCTCTAAATACGGTTCTATGGACATTTCTGATGTCTGCCCTTGTTGGTTATTCACTGTATCAAAGGAGGCGTCAATGA 2583 0.3991 MENYRDGVDEGNDLDSIDFDTLIKNLEDLTKGNDTLIPEFDYQQKRRVGYKAVKSASSGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSESSDGHSGSSFQGNEAQTDNFIEMYLRPPSASEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYNVVVSYKRASTTVNNGKVSVSFETIDVVSETFMVMRGTNRKTVGTEALRMRINGPWITKSYLEMILERKGVPRLSTPPLVSNTALPGSQEMAIIAPKPIRVTPKLVTGLEDLSQPWTRSPTKSKIEPVVATWHFISSDSSQPDNSVLDPSSFRDTIRLAPMPDSYDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVISLESYYKQVKDFKYDDFSSLDLSLLSKNIDDIRNVRRTKVPIFDVESGARSGFKELEVSEDCGVIIFEGVYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFIAQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYEDILAILDPAKFCSSVQKFIDIYIRLPGIPSNGQLTDSDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVSGPYIQIKGVNKDAVAAAGSMLKLDGSYTTKSYLEIILERLPAIERTSGGIPSQQSARLLELVEFIQSQGCSSASESSPSRVDSPIEGIIEEMQSRIRRLERWLALNTVLWTFLMSALVGYSLYQRRRQ 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1430g00008 860 Gene3D - 2 151 IPR027417 -
Gabi1430g00008 860 Gene3D - 424 601 IPR027417 -
Gabi1430g00008 860 SMART AAA_5 424 568 IPR003593 GO:0016887
Gabi1430g00008 860 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 84 IPR027417 -
Gabi1430g00008 860 CDD UMPK_like 1 134 - -
Gabi1430g00008 860 PANTHER URIDINE KINASE 1 173 - -
Gabi1430g00008 860 Gene3D - 610 772 - -
Gabi1430g00008 860 CDD UMPK_like 427 595 - -
Gabi1430g00008 860 PRINTS Uridine kinase signature 425 442 - -
Gabi1430g00008 860 PRINTS Uridine kinase signature 546 556 - -
Gabi1430g00008 860 PRINTS Uridine kinase signature 452 463 - -
Gabi1430g00008 860 SUPERFAMILY CYTH-like phosphatases 619 767 IPR033469 -
Gabi1430g00008 860 Pfam Phosphoribulokinase / Uridine kinase family 427 592 IPR006083 GO:0005524|GO:0016301
Gabi1430g00008 860 Pfam Phosphoribulokinase / Uridine kinase family 15 131 IPR006083 GO:0005524|GO:0016301
Gabi1430g00008 860 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 595 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1430g00008 Gabi-Chr1430 33967 59586 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1430g00008 420 583 PRT Gene Family AT1G55810 25.281 4.13e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1430g00008 - - gmx:100778905 1529.61