Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1430g00006 ATGGATGATGTTGTTCAGCGAGTGTTTCATGAAGGAGGACGCGATTACGTGCAACAGCAGCCTTCAACTTCTTCGTCTTCCTCCTCAATTCTCCAATCTCTCCCTCTCCATGTGTCTTTTGATCATGGATATTATTTATTGGTAAAATCTATCCAAGAGCTCCGAGAGAAAAAGGATGGCCTAGTTACAGCTGGCATTGGTGGTCCATGTGGTTCTGGTAAAACAAGCTTAGCAGAAAAGGTAGCATCTGTTATTGGTTGTACTGTTATATCAATGGAGAATTATCGTGATGGAGTTGATGAAGGGAATGATCTGGATTCTATAGATTTTGATACCCTGATCAAGAATCTTGAGGATTTGACAAAAGGCAATGATACATTAATCCCAGAGTTTGACTATCAGCAAAAGAGACGTGTTGGCTATAAAGCAGTAAAGAGTGCTTCATCTGGGGTGGTAATAGTTGATGGTACATATGCATTACATGCAAAACTGCGGTCTTTACTGGATATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCTTGCTTTCTAAAGTTCGTTATGACATTGGAGATTCTTGTTCGCTGGATTACCTTATAGATAGCATTTTCCCGTTGTTTAGAAAGCACATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAATAACAGCTTTGTCTCATCATTTAGAGAGGCAATCTACAAGGTTAAATGCAGAAGTGAGGTGTGTTCTTCCTTTCAAGGAAATGAAGCCCAGACAGATAATTTTATTGAAATGTACCTTAGACCGCCTTCAGCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATTTATCCCTTGGTGACCAGAGGATTGTTGACAAAAATTTCATTATCAGGCCCAAAGCTGAGTTTGAGGTTGGACGAATGACATTGGGTGGATTGCTGGCTCTTGGATACAACGTTGTGGTTAGTTATAAACGTGCATCCACGACCGTCAATAATGGCAAGGTTTCAGTGTCTTTTGAAACCATTGATGTTGTCAGTGAGACATTCATGGTGATGAGAGGAACTAATAGGAAGACTGTTGGAACAGAAGCATTGAGGATGCGTATCAATGGACCTTGGATTACTAAATCATATCTGGAAATGATTCTTGAGAGAAAAGGTGTACCTCGTCTCAGCACACCACCTCTTGTGTCTAATACAGCTTTGCCTGGTAGTCAAGAAATGGCAATCATTGCACCAAAGCCAATTCGTGTTACTCCTAAACTTGTTACTGGGCTTGAGGATCTATCTCAGCCGTGGACTCGATCCCCAACAAAATCTAAAATAGAACCTGTTGTTGCTACATGGCATTTCATATCTTCAGATTCCTCCCAGCCAGATAACTCAGTCCTAGATCCTTCATCTTTCAGGGACACCATTAGGCTTGCTCCGATGCCTGATTCATATGACTTGGATAGGGGATTGCTTTTGGCAGTTCAAGCAATACAAGCTTTGTTGGAGAATAAAGGTGTCCCAGTCATAGTCGGAATTGGAGGTCCAAGTGGGTCTGGAAAGACTAGTTTGGCTCATAAAATGGCAAACATCATTGGTTGTGAAGTTATTTCCCTGGAAAGCTATTATAAACAAGTAAAGGATTTTAAATATGATGACTTCAGCTCTCTTGATTTATCTTTGCTATCAAAGAATATTGATGACATAAGAAATGTTCGAAGAACAAAAGTACCTATATTTGACGTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGCGTCTATGCTTTGCATCCTGATATCCGAATATCACTTGACTTGTGGATTGCTGTTGTAGGAGGTGTTCATTCACATTTGATTTCAAGAGTTCAAAGGGATAAGAGTAGAGTGGGATGTTTTATTGCCCAAAATGAGATCATGATGACAGTGTTTCCTATGTTCCAGCAGCTTATTGAACCTCATCTTGTTCATGCACACCTTAAAATTCGAAATGACTTTGACCCTGTGCTTTCTCCGGAGAGTTCATTGTTTGTATTGAAGAGTAACAAAAAAGTCGCTTATGAAGATATTCTTGCAATTCTTGATCCAGCAAAATTTTGCAGTTCAGTGCAGAAATTTATTGATATTTATATAAGGCTTCCTGGGATACCTTCTAATGGGCAGTTGACAGATAGTGATTGCATTCGAGTCAGAATATGTGAAGGCAGATTTGCATTGCTGATACGTGAGCCTATCAGAGAAGGAAACTTCATCATTCAGCCTAAAGTGGATTTTGATATTAGCATCAGTACGGTTGCTGGTCTTCTAAATCTTGGGTATCAAGCAGTTGCTTATATTGAAGCGTCTGCATTCATCTATCAGGATGGAAAGATTCTAATTGAGGTTGATCATCTACAAGATGTCTCTGGCCCATACATTCAGATAAAGGGTGTTAATAAAGATGCGGTGGCAGCAGCAGGTTCAATGCTTAAATTGGATGGTTCATATACTACTAAGAGTTATCTTGAAATAATTTTGGAAAGACTACCAGCAATAGAGAGAACTTCTGGTGGGATTCCTTCTCAGCAATCAGCAAGACTGCTAGAGCTTGTTGAATTTATTCAGTCTCAGGGATGTAGCTCTGCTTCAGAGTCGTCACCAAGTAGGGTAGACTCTCCAATTGAAGGGATTATTGAGGAGATGCAATCAAGGATTAGAAGGCTTGAAAGGTGGCTTGCTCTAAATACGGTTCTATGGACATTTCTGATGTCTGCCCTTGTTGGTTATTCACTGTATCAAAGGAGGCGTCAATGA 2841 0.4016 MDDVVQRVFHEGGRDYVQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTAGIGGPCGSGKTSLAEKVASVIGCTVISMENYRDGVDEGNDLDSIDFDTLIKNLEDLTKGNDTLIPEFDYQQKRRVGYKAVKSASSGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSEVCSSFQGNEAQTDNFIEMYLRPPSASEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYNVVVSYKRASTTVNNGKVSVSFETIDVVSETFMVMRGTNRKTVGTEALRMRINGPWITKSYLEMILERKGVPRLSTPPLVSNTALPGSQEMAIIAPKPIRVTPKLVTGLEDLSQPWTRSPTKSKIEPVVATWHFISSDSSQPDNSVLDPSSFRDTIRLAPMPDSYDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVISLESYYKQVKDFKYDDFSSLDLSLLSKNIDDIRNVRRTKVPIFDVESGARSGFKELEVSEDCGVIIFEGVYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFIAQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYEDILAILDPAKFCSSVQKFIDIYIRLPGIPSNGQLTDSDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVSGPYIQIKGVNKDAVAAAGSMLKLDGSYTTKSYLEIILERLPAIERTSGGIPSQQSARLLELVEFIQSQGCSSASESSPSRVDSPIEGIIEEMQSRIRRLERWLALNTVLWTFLMSALVGYSLYQRRRQ 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1430g00006 946 SMART AAA_5 510 654 IPR003593 GO:0016887
Gabi1430g00006 946 SMART AAA_5 60 210 IPR003593 GO:0016887
Gabi1430g00006 946 Gene3D - 694 858 - -
Gabi1430g00006 946 CDD UMPK_like 513 681 - -
Gabi1430g00006 946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 175 IPR027417 -
Gabi1430g00006 946 Pfam Phosphoribulokinase / Uridine kinase family 106 222 IPR006083 GO:0005524|GO:0016301
Gabi1430g00006 946 Pfam Phosphoribulokinase / Uridine kinase family 513 678 IPR006083 GO:0005524|GO:0016301
Gabi1430g00006 946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 499 681 IPR027417 -
Gabi1430g00006 946 Gene3D - 62 243 IPR027417 -
Gabi1430g00006 946 PRINTS Uridine kinase signature 511 528 - -
Gabi1430g00006 946 PRINTS Uridine kinase signature 632 642 - -
Gabi1430g00006 946 PRINTS Uridine kinase signature 538 549 - -
Gabi1430g00006 946 SUPERFAMILY CYTH-like phosphatases 705 853 IPR033469 -
Gabi1430g00006 946 CDD UMPK_like 65 225 - -
Gabi1430g00006 946 PANTHER URIDINE KINASE 490 870 - -
Gabi1430g00006 946 Gene3D - 510 687 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1430g00006 Gabi-Chr1430 33967 60347 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1430g00006 506 669 PRT Gene Family AT1G55810 25.281 3.27e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1430g00006 - - gmx:100778905 1658.27