Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1430g00005 ATGGATGATGTTGTTCAGCGAGTGTTTCATGAAGGAGGACGCGATTACGTGCAACAGCAGCCTTCAACTTCTTCGTCTTCCTCCTCAATTCTCCAATCTCTCCCTCTCCATGTGTCTTTTGATCATGGATATTATTTATTGGTAAAATCTATCCAAGAGCTCCGAGAGAAAAAGGATGGCCTAGTTACAGCTGGCATTGGTGGTCCATGTGGTTCTGGTAAAACAAGCTTAGCAGAAAAGGTAGCATCTGTTATTGGTTGTACTGTTATATCAATGGAGAATTATCGTGATGGAGTTGATGAAGGGAATGATCTGGATTCTATAGATTTTGATACCCTGATCAAGAATCTTGAGGATTTGACAAAAGGCAATGATACATTAATCCCAGAGTTTGACTATCAGCAAAAGAGACGTGTTGGCTATAAAGCAGTAAAGAGTGCTTCATCTGGGGTGGTAATAGTTGATGGTACATATGCATTACATGCAAAACTGCGGTCTTTACTGGATATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCTTGCTTTCTAAAGTTCGTTATGACATTGGAGATTCTTGTTCGCTGGATTACCTTATAGATAGCATTTTCCCGTTGTTTAGAAAGCACATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAATAACAGCTTTGTCTCATCATTTAGAGAGGCAATCTACAAGGTTAAATGCAGAAGTGAGTCTTCAGATGGACATTCAGGTTCTTCCTTTCAAGGAAATGAAGCCCAGACAGATAATTTTATTGAAATGTACCTTAGACCGCCTTCAGCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATTTATCCCTTGGTGACCAGAGGATTGTTGACAAAAATTTCATTATCAGGCCCAAAGCTGAGTTTGAGGTTGGACGAATGACATTGGGTGGATTGCTGGCTCTTGGATACAACGTTGTGGTTAGTTATAAACGTGCATCCACGACCGTCAATAATGGCAAGGTTTCAGTGTCTTTTGAAACCATTGATGTTGTCAGTGAGACATTCATGGTGATGAGAGGAACTAATAGGAAGACTGTTGGAACAGAAGCATTGAGGATGCGTATCAATGGACCTTGGATTACTAAATCATATCTGGAAATGATTCTTGAGAGAAAAGGTGTACCTCGTCTCAGCACACCACCTCTTGTGTCTAATACAGCTTTGCCTGGTAGTCAAGAAATGGCAATCATTGCACCAAAGCCAATTCGTGTTACTCCTAAACTTGTTACTGGGCTTGAGGATCTATCTCAGCCGTGGACTCGATCCCCAACAAAATCTAAAATAGAACCTGTTGTTGCTACATGGCATTTCATATCTTCAGATTCCTCCCAGCCAGATAACTCAGTCCTAGATCCTTCATCTTTCAGGGACACCATTAGGCTTGCTCCGATGCCTGATTCATATGACTTGGATAGGGGATTGCTTTTGGCAGTTCAAGCAATACAAGCTTTGTTGGAGAATAAAGGTGTCCCAGTCATAGTCGGAATTGGAGGTCCAAGTGGGTCTGGAAAGACTAGTTTGGCTCATAAAATGGCAAACATCATTGGTTGTGAAGTTATTTCCCTGGAAAGCTATTATAAACAAGTAAAGGATTTTAAATATGATGACTTCAGCTCTCTTGATTTATCTTTGCTATCAAAGAATATTGATGACATAAGAAATGTTCGAAGAACAAAAGTACCTATATTTGACGTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGCGTCTATGCTTTGCATCCTGATATCCGAATATCACTTGACTTGTGGATTGCTGTTGTAGGAGGTGTTCATTCACATTTGATTTCAAGAGTTCAAAGGGATAAGAGTAGAGTGGGATGTTTTATTGCCCAAAATGAGATCATGATGACAGTGTTTCCTATGTTCCAGCAGCTTATTGAACCTCATCTTGTTCATGCACACCTTAAAATTCGAAATGACTTTGACCCTGTGCTTTCTCCGGAGAGTTCATTGTTTGTATTGAAGAGTAACAAAAAAGTCGCTTATGAAGATATTCTTGCAATTCTTGATCCAGCAAAATTTTGCAGTTCAGTGCAGAAATTTATTGATATTTATATAAGGCTTCCTGGGATACCTTCTAATGGGCAGTTGACAGATAGTGATTGCATTCGAGTCAGAATATGTGAAGGCAGATTTGCATTGCTGATACGTGAGCCTATCAGAGAAGGAAACTTCATCATTCAGCCTAAAGTGGATTTTGATATTAGCATCAGTACGGTTGCTGGTCTTCTAAATCTTGGGTATCAAGCAGTTGCTTATATTGAAGCGTCTGCATTCATCTATCAGGATGGAAAGATTCTAATTGAGGTTGATCATCTACAAGATGTCTCTGGCCCATACATTCAGATAAAGGGTGTTAATAAAGATGCGGTGGCAGCAGCAGGTTCAATGCTTAAATTGGATGGTTCATATACTACTAAGAGTTATCTTGAAATAATTTTGGAAAGACTACCAGCAATAGAGAGAACTTCTGGTGGGATTCCTTCTCAGCAATCAGCAAGACTGCTAGAGCTTGTTGAATTTATTCAGTCTCAGGGATGTAGCTCTGCTTCAGAGTCGTCACCAAGTAGGGTAGACTCTCCAATTGAAGGGATTATTGAGGAGATGCAATCAAGGATTAGAAGGCTTGAAAGGTGGCTTGCTCTAAATACGGTTCTATGGACATTTCTGATGTCTGCCCTTGTTGGTTATTCACTGTATCAAAGGAGGCGTCAATGA 2856 0.4016 MDDVVQRVFHEGGRDYVQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTAGIGGPCGSGKTSLAEKVASVIGCTVISMENYRDGVDEGNDLDSIDFDTLIKNLEDLTKGNDTLIPEFDYQQKRRVGYKAVKSASSGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSESSDGHSGSSFQGNEAQTDNFIEMYLRPPSASEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYNVVVSYKRASTTVNNGKVSVSFETIDVVSETFMVMRGTNRKTVGTEALRMRINGPWITKSYLEMILERKGVPRLSTPPLVSNTALPGSQEMAIIAPKPIRVTPKLVTGLEDLSQPWTRSPTKSKIEPVVATWHFISSDSSQPDNSVLDPSSFRDTIRLAPMPDSYDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVISLESYYKQVKDFKYDDFSSLDLSLLSKNIDDIRNVRRTKVPIFDVESGARSGFKELEVSEDCGVIIFEGVYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFIAQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYEDILAILDPAKFCSSVQKFIDIYIRLPGIPSNGQLTDSDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVSGPYIQIKGVNKDAVAAAGSMLKLDGSYTTKSYLEIILERLPAIERTSGGIPSQQSARLLELVEFIQSQGCSSASESSPSRVDSPIEGIIEEMQSRIRRLERWLALNTVLWTFLMSALVGYSLYQRRRQ 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1430g00005 951 CDD UMPK_like 518 686 - -
Gabi1430g00005 951 Pfam Phosphoribulokinase / Uridine kinase family 104 222 IPR006083 GO:0005524|GO:0016301
Gabi1430g00005 951 Pfam Phosphoribulokinase / Uridine kinase family 518 683 IPR006083 GO:0005524|GO:0016301
Gabi1430g00005 951 Gene3D - 699 863 - -
Gabi1430g00005 951 PRINTS Uridine kinase signature 637 647 - -
Gabi1430g00005 951 PRINTS Uridine kinase signature 516 533 - -
Gabi1430g00005 951 PRINTS Uridine kinase signature 543 554 - -
Gabi1430g00005 951 Gene3D - 515 692 IPR027417 -
Gabi1430g00005 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 686 IPR027417 -
Gabi1430g00005 951 PANTHER URIDINE KINASE 495 875 - -
Gabi1430g00005 951 SUPERFAMILY CYTH-like phosphatases 710 858 IPR033469 -
Gabi1430g00005 951 SMART AAA_5 515 659 IPR003593 GO:0016887
Gabi1430g00005 951 SMART AAA_5 60 210 IPR003593 GO:0016887
Gabi1430g00005 951 CDD UMPK_like 65 225 - -
Gabi1430g00005 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 175 IPR027417 -
Gabi1430g00005 951 Gene3D - 62 242 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1430g00005 Gabi-Chr1430 33967 60347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1430g00005 511 674 PRT Gene Family AT1G55810 25.281 3.35e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1430g00005 - - gmx:100778905 1676.37