Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1430g00004 ATGGATGATGTTGTTCAGCGAGTGTTTCATGAAGGAGGACGCGATTACGTGCAACAGCAGCCTTCAACTTCTTCGTCTTCCTCCTCAATTCTCCAATCTCTCCCTCTCCATGTGTCTTTTGATCATGGATATTATTTATTGGTAAAATCTATCCAAGAGCTCCGAGAGAAAAAGGATGGCCTAGTTACAGCTGGCATTGGTGGTCCATGTGGTTCTGGTAAAACAAGCTTAGCAGAAAAGGTAGCATCTGTTATTGGTTGTACTGTTATATCAATGGAGAATTATCGTGATGGAGTTGATGAAGGGAATGATCTGGATTCTATAGATTTTGATACCCTGATCAAGAATCTTGAGGATTTGACAAAAGGCAATGATACATTAATCCCAGAGTTTGACTATCAGCAAAAGAGACGTGTTGGCTATAAAGCAGTAAAGAGTGCTTCATCTGGGGTAATAGTTGATGGTACATATGCATTACATGCAAAACTGCGGTCTTTACTGGATATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCTTGCTTTCTAAAGTTCGTTATGACATTGGAGATTCTTGTTCGCTGGATTACCTTATAGATAGCATTTTCCCGTTGTTTAGAAAGCACATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAATAACAGCTTTGTCTCATCATTTAGAGAGGCAATCTACAAGGTTAAATGCAGAAGTGAGTCTTCAGATGGACATTCAGGTTCTTCCTTTCAAGGAAATGAAGCCCAGACAGATAATTTTATTGAAATGTACCTTAGACCGCCTTCAGCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATTTATCCCTTGGTGACCAGAGGATTGTTGACAAAAATTTCATTATCAGGCCCAAAGCTGAGTTTGAGGTTGGACGAATGACATTGGGTGGATTGCTGGCTCTTGGATACAACGTTGTGGTTAGTTATAAACGTGCATCCACGACCGTCAATAATGGCAAGGTTTCAGTGTCTTTTGAAACCATTGATGTTGTCAGTGAGACATTCATGGTGATGAGAGGAACTAATAGGAAGACTGTTGGAACAGAAGCATTGAGGATGCGTATCAATGGACCTTGGATTACTAAATCATATCTGGAAATGATTCTTGAGAGAAAAGGTGTACCTCGTCTCAGCACACCACCTCTTGTGTCTAATACAGCTTTGCCTGGTAGTCAAGAAATGGCAATCATTGCACCAAAGCCAATTCGTGTTACTCCTAAACTTGTTACTGGGCTTGAGGATCTATCTCAGCCGTGGACTCGATCCCCAACAAAATCTAAAATAGAACCTGTTGTTGCTACATGGCATTTCATATCTTCAGATTCCTCCCAGCCAGATAACTCAGTCCTAGATCCTTCATCTTTCAGGGACACCATTAGGCTTGCTCCGATGCCTGATTCATATGACTTGGATAGGGGATTGCTTTTGGCAGTTCAAGCAATACAAGCTTTGTTGGAGAATAAAGGTGTCCCAGTCATAGTCGGAATTGGAGGTCCAAGTGGGTCTGGAAAGACTAGTTTGGCTCATAAAATGGCAAACATCATTGGTTGTGAAGTTATTTCCCTGGAAAGCTATTATAAACAAGTAAAGGATTTTAAATATGATGACTTCAGCTCTCTTGATTTATCTTTGCTATCAAAGAATATTGATGACATAAGAAATGTTCGAAGAACAAAAGTACCTATATTTGACGTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGCGTCTATGCTTTGCATCCTGATATCCGAATATCACTTGACTTGTGGATTGCTGTTGTAGGAGGTGTTCATTCACATTTGATTTCAAGAGTTCAAAGGGATAAGAGTAGAGTGGGATGTTTTATTGCCCAAAATGAGATCATGATGACAGTGTTTCCTATGTTCCAGCAGCTTATTGAACCTCATCTTGTTCATGCACACCTTAAAATTCGAAATGACTTTGACCCTGTGCTTTCTCCGGAGAGTTCATTGTTTGTATTGAAGAGTAACAAAAAAGTCGCTTATGAAGATATTCTTGCAATTCTTGATCCAGCAAAATTTTGCAGTTCAGTGCAGAAATTTATTGATATTTATATAAGGCTTCCTGGGATACCTTCTAATGGGCAGTTGACAGATAGTGATTGCATTCGAGTCAGAATATGTGAAGGCAGATTTGCATTGCTGATACGTGAGCCTATCAGAGAAGGAAACTTCATCATTCAGCCTAAAGTGGATTTTGATATTAGCATCAGTACGGTTGCTGGTCTTCTAAATCTTGGGTATCAAGCAGTTGCTTATATTGAAGCGTCTGCATTCATCTATCAGGATGGAAAGATTCTAATTGAGGTTGATCATCTACAAGATGTCTCTGGCCCATACATTCAGATAAAGGGTGTTAATAAAGATGCGGTGGCAGCAGCAGGTTCAATGCTTAAATTGGATGGTTCATATACTACTAAGAGTTATCTTGAAATAATTTTGGAAAGACTACCAGCAATAGAGAGAACTTCTGGTGGGATTCCTTCTCAGCAATCAGCAAGACTGCTAGAGCTTGTTGAATTTATTCAGTCTCAGGGATGTAGCTCTGCTTCAGAGTCGTCACCAAGTAGGGTAGACTCTCCAATTGAAGGGATTATTGAGGAGATGCAATCAAGGATTAGAAGGCTTGAAAGGTGGCTTGCTCTAAATACGGTTCTATGGACATTTCTGATGTCTGCCCTTGTTGGTTATTCACTGTATCAAAGGAGGCGTCAATGA 2853 0.4013 MDDVVQRVFHEGGRDYVQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTAGIGGPCGSGKTSLAEKVASVIGCTVISMENYRDGVDEGNDLDSIDFDTLIKNLEDLTKGNDTLIPEFDYQQKRRVGYKAVKSASSGVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSESSDGHSGSSFQGNEAQTDNFIEMYLRPPSASEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYNVVVSYKRASTTVNNGKVSVSFETIDVVSETFMVMRGTNRKTVGTEALRMRINGPWITKSYLEMILERKGVPRLSTPPLVSNTALPGSQEMAIIAPKPIRVTPKLVTGLEDLSQPWTRSPTKSKIEPVVATWHFISSDSSQPDNSVLDPSSFRDTIRLAPMPDSYDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVISLESYYKQVKDFKYDDFSSLDLSLLSKNIDDIRNVRRTKVPIFDVESGARSGFKELEVSEDCGVIIFEGVYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFIAQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYEDILAILDPAKFCSSVQKFIDIYIRLPGIPSNGQLTDSDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVSGPYIQIKGVNKDAVAAAGSMLKLDGSYTTKSYLEIILERLPAIERTSGGIPSQQSARLLELVEFIQSQGCSSASESSPSRVDSPIEGIIEEMQSRIRRLERWLALNTVLWTFLMSALVGYSLYQRRRQ 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1430g00004 950 Gene3D - 514 691 IPR027417 -
Gabi1430g00004 950 CDD UMPK_like 65 224 - -
Gabi1430g00004 950 SUPERFAMILY CYTH-like phosphatases 709 857 IPR033469 -
Gabi1430g00004 950 Gene3D - 62 241 IPR027417 -
Gabi1430g00004 950 CDD UMPK_like 517 685 - -
Gabi1430g00004 950 Gene3D - 698 862 - -
Gabi1430g00004 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 685 IPR027417 -
Gabi1430g00004 950 SMART AAA_5 60 209 IPR003593 GO:0016887
Gabi1430g00004 950 SMART AAA_5 514 658 IPR003593 GO:0016887
Gabi1430g00004 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 174 IPR027417 -
Gabi1430g00004 950 Pfam Phosphoribulokinase / Uridine kinase family 106 221 IPR006083 GO:0005524|GO:0016301
Gabi1430g00004 950 Pfam Phosphoribulokinase / Uridine kinase family 517 682 IPR006083 GO:0005524|GO:0016301
Gabi1430g00004 950 PANTHER URIDINE KINASE 494 874 - -
Gabi1430g00004 950 PRINTS Uridine kinase signature 542 553 - -
Gabi1430g00004 950 PRINTS Uridine kinase signature 515 532 - -
Gabi1430g00004 950 PRINTS Uridine kinase signature 636 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1430g00004 Gabi-Chr1430 33967 60347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1430g00004 510 673 PRT Gene Family AT1G55810 25.281 3.62e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1430g00004 - - gmx:100778905 1670.21