Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1430g00002 ATGGAAATCACTAGCAACCACAGTAGTAGCATGATGTGGTTTTTTAAGGATAGAGGATTTGATGATAACAACATACAAGGAATGTTCAGAAAGTGCAAACGCCTTGAGGTTTTACATCAGGAAAAAGCAAATGAGAATTGGGAGTACCTGAGAAGCATTGGAATTCAAGAAAGGAAACTTCCCTCAATTGTTTCAAAATGTCCCAAGATTCTTGCATTGGGTCTTAATGAGAAGATTGTGCCCATGGTTGAGTGTCTCAAGACACTAGAAACAAAACCCCATGAAGTTACTTCTGCCATAACCAAGTTCCCTCACATACTCTCACATAGTGTGGAAGAGAAGCTTTGTCCCCTTTTGGCCTTCTTTCAGGCATTGGGCATCCCTGAAAAGCAAATTGGGAAAACCATACTGCTTAACCCTAGGCTTATCAGCTACAGTATTGAAACAAAGCTTGCAGAAATTGTGGACTTCTTTGCTAGCCTTGGTCTCAGTAAAGATGGATTGATTGGAAAAGTTATAGTCAGGGACCCCTTTATTATGGGTTATAGTGTTGATAAAAGGCTCCGCCCTACTTCGCGGTTTCTGAAGTCAATAGGTCTGACCGAGTCGGATCTTCAAGCAGTGGCTTTGAACTTCCCAGCAATCTTGAGTAGAGATGTGAACAAGGTTTTGGCACCCAATTATGCTTATTTGAAGAAATGTGGATTTCAAGACGGACAGCTAGTTGCTTTGGTGGTTGGTTTTCCTCCTATCCTGATCAAGAGCATCCAGAATTCTTTAGAACCAAGGATCAAGTTTTTAGTAGATGTAATGGGGAGACAAGTTGATGAAGTCATTGATTATCCTTGCTTCTTTCGTCACGGCCTGAAGAAAAGATTAGAGTTGCGGTACAAAATTTTAAAGCAGAGGAATTTGAATTGTAGCTTGAGTGAAATGCTGGACTGTAATGAGAAGAAGTTCCTCATGAAGTTTGGCTTGTTAGAAGGATGTGCCTTGAGTAACTAG 1005 0.408 MEITSNHSSSMMWFFKDRGFDDNNIQGMFRKCKRLEVLHQEKANENWEYLRSIGIQERKLPSIVSKCPKILALGLNEKIVPMVECLKTLETKPHEVTSAITKFPHILSHSVEEKLCPLLAFFQALGIPEKQIGKTILLNPRLISYSIETKLAEIVDFFASLGLSKDGLIGKVIVRDPFIMGYSVDKRLRPTSRFLKSIGLTESDLQAVALNFPAILSRDVNKVLAPNYAYLKKCGFQDGQLVALVVGFPPILIKSIQNSLEPRIKFLVDVMGRQVDEVIDYPCFFRHGLKKRLELRYKILKQRNLNCSLSEMLDCNEKKFLMKFGLLEGCALSN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1430g00002 334 SMART mt_12 242 274 IPR003690 GO:0003690|GO:0006355
Gabi1430g00002 334 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Gabi1430g00002 334 SMART mt_12 170 201 IPR003690 GO:0003690|GO:0006355
Gabi1430g00002 334 SMART mt_12 61 92 IPR003690 GO:0003690|GO:0006355
Gabi1430g00002 334 SMART mt_12 26 56 IPR003690 GO:0003690|GO:0006355
Gabi1430g00002 334 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Gabi1430g00002 334 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Gabi1430g00002 334 SMART mt_12 206 237 IPR003690 GO:0003690|GO:0006355
Gabi1430g00002 334 FunFam transcription termination factor MTERF6, chloroplastic/mitochondrial 96 328 - -
Gabi1430g00002 334 PANTHER CGI-12 PROTEIN-RELATED 131 252 IPR003690 GO:0003690|GO:0006355
Gabi1430g00002 334 Pfam mTERF 14 321 IPR003690 GO:0003690|GO:0006355
Gabi1430g00002 334 Gene3D Transcription termination factor 3, mitochondrial 88 327 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1430g00002 Gabi-Chr1430 17246 18920 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gabi1430g00002 mTERF 1.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1430g00002 K15031 - gmx:100816929 571.237