Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1429g00007 ATGGAGTTCGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAGCAAGAAGAGAGAGACTCGACGAGGAAGAAGAAGGAGAGCAGCGACAAGAGCGAAAGGAGCTACAGGAAGCGCGATGAGGTGGACGATGTCGCCGAAGACAAGAGGAGCAAGAGGTCAAGGGGCGACGACGAGAATGGCTCCAAGAAGGATAAGAATCGTGATGATCGCGACAAGGAGCGCCATAGGAGTAGCAGAGACAGGGAAAGAGGTGAGAGGAGTAGCAGGGACAGAGATAGAGACAGGGACAGAGACAGAGACAGAGACAAAGAGAAGGATAGGAGAGACAGGGACAAAGAGAGGGAGAAGAGAGAAAGGGACAGAGACAGAGAGAGAAAGGAGAGAGAAAGGGAAGAGATAGAGAGGTCCAGGAGGAGCAGGAGTCGTTCTGAGCGAGACAGAGAGAGAGAACGAGATTTCGAAATGAGAGATGGCCGGAGATATAGGGAAAAGAAAGAGGCTGTGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCCTTGAAGGCAATGGAGAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGGGATGTCCGTCTGATCATGGATAGAAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTTGGACAACCTGTAATGGTCAAGCCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTAATACCACAAGTGGAGCTGCTGGTGTAGCAGGACCATATGGAGCTGTGGACAGAAAACTGTATGTGGGGAACCTTCACTTCAACATGACTGAGAGTCAGTTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGATCTTGTACAACTGCCTCTTGACCTGGAGACCGGACAGTGCAAGGGATTTGGGTTTATTCAATTTTCCCATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCAGGATTATCAAGGTTTCATCTGTAACAGATCATGTGGGAAGCCAAGATACAACTGCAAAATCAGCTGACTTTGATGATGATGAAGGTGGATTGGCCTTAAATGCCCAATCGAGAGCATTGCTTATGCAGAAGCTGGATCGCTCTGGCATTGCTGCAAGCATTGGTGTACCCATTGTGAATGGGTCAGCTCCTGCTCAGCAGGCTATTAGCTTGCCTGTTGGTAATCCTGGTATAATACCAGCACCAGCTCTCCCAATACAAATTATACCGACCCCAGTGACTGAACCTGTTGGAAACCCCAGCGAGTGTTTACTGTTGAAGAATATGTTTGATCCAACCACTGAGACAGAACCAGATTTTGATTTAGACATCAAAGAGGATGTAGAAGAAGAGTGTTCTAAATATGGGCGCGTGAAGCATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGAAATGGTGGAAGCAGCAAGTGCTGCTCAACGTGCAATGCACATGAGGTGGTTTGCACGCAGATTGATTTCTGCTGTCTACATGCAACCTCATATATATGAAGCCAAGTTTAAAGGGGAAGTTTGA 1641 0.4662 MEFDEYDYLEKTVEEQEERDSTRKKKESSDKSERSYRKRDEVDDVAEDKRSKRSRGDDENGSKKDKNRDDRDKERHRSSRDRERGERSSRDRDRDRDRDRDRDKEKDRRDRDKEREKRERDRDRERKEREREEIERSRRSRSRSERDRERERDFEMRDGRRYREKKEAVEPEADPERDQRTVFAYQMPLKAMERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVDLVQLPLDLETGQCKGFGFIQFSHLEHAKAAQSLNGKLEIAGRIIKVSSVTDHVGSQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGVPIVNGSAPAQQAISLPVGNPGIIPAPALPIQIIPTPVTEPVGNPSECLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFEMVEAASAAQRAMHMRWFARRLISAVYMQPHIYEAKFKGEV 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1429g00007 546 SMART rrm1_1 181 253 IPR000504 GO:0003723
Gabi1429g00007 546 SMART rrm1_1 453 530 IPR000504 GO:0003723
Gabi1429g00007 546 SMART rrm1_1 283 356 IPR000504 GO:0003723
Gabi1429g00007 546 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 542 IPR006509 GO:0003723|GO:0005634|GO:0006397
Gabi1429g00007 546 FunFam Splicing factor, CC1-like protein 447 546 - -
Gabi1429g00007 546 CDD RRM1_RBM39_like 181 253 - -
Gabi1429g00007 546 Gene3D - 278 374 IPR012677 -
Gabi1429g00007 546 CDD RRM2_RBM23_RBM39 284 361 - -
Gabi1429g00007 546 Gene3D - 110 267 IPR012677 -
Gabi1429g00007 546 Gene3D - 448 545 IPR012677 -
Gabi1429g00007 546 CDD RRM3_RBM39_like 451 533 - -
Gabi1429g00007 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 353 IPR000504 GO:0003723
Gabi1429g00007 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 249 IPR000504 GO:0003723
Gabi1429g00007 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 475 528 IPR000504 GO:0003723
Gabi1429g00007 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 360 IPR000504 GO:0003723
Gabi1429g00007 546 NCBIfam splicing factor, CC1-like family 68 542 IPR006509 GO:0003723|GO:0005634|GO:0006397
Gabi1429g00007 546 MobiDBLite consensus disorder prediction 1 154 - -
Gabi1429g00007 546 FunFam Splicing factor CC1-like 266 371 - -
Gabi1429g00007 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 257 IPR000504 GO:0003723
Gabi1429g00007 546 SUPERFAMILY RNA-binding domain, RBD 173 260 IPR035979 GO:0003676
Gabi1429g00007 546 Coils Coil 113 147 - -
Gabi1429g00007 546 MobiDBLite consensus disorder prediction 12 154 - -
Gabi1429g00007 546 FunFam Splicing factor CC1-like 107 265 - -
Gabi1429g00007 546 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 375 470 IPR029123 -
Gabi1429g00007 546 SUPERFAMILY RNA-binding domain, RBD 282 535 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1429g00007 Gabi-Chr1429 194455 201476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1429g00007 196 346 Eukaryotic Initiation Factors Gene Family AT1G49760 30.719 3.71e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1429g00007 K13091 - gmx:100802446 688.337