Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1429g00003 ATGATGTTTCCAGGTATGAATAGGGAGAAGGAGATGTCTGCTATGGTCTCAGCTTTGACCCACGTTGTTTCTGGAGAGGTTCCAAGCGGTGATTATGTGGTTCTTGATCAACCGAGTGCAATTGGAGGAGGTGGTGGTGGTGATGCATCTCCTTCTGTTACACCAAACTTACCTTCTTTGTCTTCTTCTTCATCTGATTATGTTGGTAGTTCTGCTTTCAAGAGAAGAAGGGGAGATGATAGTTCCTTAGGTGCTGCTTCTTCCCCTGCTATTCCAACAATTGCAGAATGTTCAAACAATTCGACCAGCAGCACAAGAACAGAAAGGGGTGAAATGGGAAATGCTGTGTATGAATATAGAACAACAGAGAATGTGGTGAGGGGAGAACCAAGGAGAAAGTACAGAGGGGTGAGACAGAGGCCATGGGGTAAATGGGCTGCAGAGATCAGAGACCCATTCAAAGCAGCGAGGGTTTGGTTAGGTACATTTGACACAGCTGAAGCAGCTGCAAGAGCATACGATGAAGCTGCACTGCGTTTCAGAGGAAACAAGGCCAAACTCAATTTCCCTGAAAATGTTACTCTCCGGCAACCTACGACGACTCAAAGGAACATTTCGAATTCTACAACTTCCCTTGTGTCTATTCCAACTTCCACTGACCCAATTGTTCACTCTGAAGCTCTTTTCTCTTCTCAGCCTTCAAGCAACATTTATGAGCATTTCCACCTCTCAAACTTCCCTATGAACATTTATGATGATCGTTTCATTATGACATCTACGATGGCTTCGCATCTTCAATCTTCGTCAACGCCACCAGCTTCTTCTTCTTCTTCTTCTGCGTTTGTTTCCTCTATGACTTCTTCGCAGGCCACTTCAATTCCTTCAATTTATTCTACTCAGTTGCCGCCCTGGTCAGTTTCCAGTTATAGCTCTTCTTCCTCGGGATGA 948 0.4483 MMFPGMNREKEMSAMVSALTHVVSGEVPSGDYVVLDQPSAIGGGGGGDASPSVTPNLPSLSSSSSDYVGSSAFKRRRGDDSSLGAASSPAIPTIAECSNNSTSSTRTERGEMGNAVYEYRTTENVVRGEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVTLRQPTTTQRNISNSTTSLVSIPTSTDPIVHSEALFSSQPSSNIYEHFHLSNFPMNIYDDRFIMTSTMASHLQSSSTPPASSSSSSAFVSSMTSSQATSIPSIYSTQLPPWSVSSYSSSSSG 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1429g00003 315 MobiDBLite consensus disorder prediction 52 70 - -
Gabi1429g00003 315 Gene3D AP2/ERF domain 132 192 IPR036955 GO:0003700|GO:0006355
Gabi1429g00003 315 PANTHER DNA-BINDING DOMAIN 103 277 IPR044808 GO:0003700|GO:0009873
Gabi1429g00003 315 SUPERFAMILY DNA-binding domain 133 191 IPR016177 GO:0003677
Gabi1429g00003 315 SMART rav1_2 133 196 IPR001471 GO:0003700|GO:0006355
Gabi1429g00003 315 CDD AP2 133 192 IPR001471 GO:0003700|GO:0006355
Gabi1429g00003 315 FunFam Ethylene-responsive transcription factor 2 132 191 - -
Gabi1429g00003 315 MobiDBLite consensus disorder prediction 38 89 - -
Gabi1429g00003 315 PRINTS Ethylene responsive element binding protein signature 134 145 IPR001471 GO:0003700|GO:0006355
Gabi1429g00003 315 PRINTS Ethylene responsive element binding protein signature 156 172 IPR001471 GO:0003700|GO:0006355
Gabi1429g00003 315 ProSiteProfiles AP2/ERF domain profile. 133 190 IPR001471 GO:0003700|GO:0006355
Gabi1429g00003 315 Pfam AP2 domain 133 182 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1429g00003 Gabi-Chr1429 77327 78588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1429g00003 141 231 AP2-EREBP Transcription Factor Family AT5G64750 63.208 2.02e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1429g00003 AP2 3.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1429g00003 - - pvu:PHAVU_009G137900g 302.753