Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1427g00015 ATGCGAAACCCTTCATCATCATCATCCATGGCTGTGAAGGAGAAGATGAGTGTGAAGAACAAGAAGCCTTGCAATGGCGCCATCGAGGTTCACTTTAGAGGTGTACGGAAGAGACCATGGGGACGTTACGCCGCCGAGATCAGAGATCCAGGCAAGAAGAGCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGAAGCCGCTAGAGCTTACGACGCCGCCGCGAGGCAGTTTCGTGGCCCTAAGGCTAAGACCAACTTCCCTCCTCCTCCTCATCCTTCTGATACCAAAGAAAACCTCAACCACCATGTTAACAACAACAACAACCAGAGCCCTAGCCAGAGCAGCACCGTTGAGTCGTCCACTCCGGAGCGTGAGGTCACGCGCCGACGTGACGTTGCCGGCGCGGTTATGGATCGGTTCCCGTTTCTCCAGCTGCAGCCGCAACTCGTGGCGTTTGGCGGCGGAGGTGGTGGAAGTGCGGTTGATGGCATGGTGACTCCCGTACGCCCGGTTTTCTTTCTTGACCCGGCTGGTCGAGCAGAGTTTCTGAGCCAGCGTTTTCCTGTCCGGTTCGAACCGGGACCGGTCGAGTTCACCACCGGGTTTAGCGGTGCGGTCCAGAGTGACTCGGATTCATCCTCAGTTGTTGATTGTCAGCCCAAAATTGCTCTCAATCTTGATCTTAACTTAGCTCCGCCAATGGACGCTTAA 714 0.5644 MRNPSSSSSMAVKEKMSVKNKKPCNGAIEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQFRGPKAKTNFPPPPHPSDTKENLNHHVNNNNNQSPSQSSTVESSTPEREVTRRRDVAGAVMDRFPFLQLQPQLVAFGGGGGGSAVDGMVTPVRPVFFLDPAGRAEFLSQRFPVRFEPGPVEFTTGFSGAVQSDSDSSSVVDCQPKIALNLDLNLAPPMDA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1427g00015 237 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Gabi1427g00015 237 CDD AP2 31 88 IPR001471 GO:0003700|GO:0006355
Gabi1427g00015 237 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Gabi1427g00015 237 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Gabi1427g00015 237 SUPERFAMILY DNA-binding domain 31 88 IPR016177 GO:0003677
Gabi1427g00015 237 MobiDBLite consensus disorder prediction 100 122 - -
Gabi1427g00015 237 FunFam Ethylene-responsive transcription factor 2 30 89 - -
Gabi1427g00015 237 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 158 - -
Gabi1427g00015 237 MobiDBLite consensus disorder prediction 1 23 - -
Gabi1427g00015 237 MobiDBLite consensus disorder prediction 79 129 - -
Gabi1427g00015 237 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Gabi1427g00015 237 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
Gabi1427g00015 237 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1427g00015 Gabi-Chr1427 154829 155888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1427g00015 9 235 AP2-EREBP Transcription Factor Family AT5G44210 46.087 2.14e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1427g00015 AP2 2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1427g00015 K09286 - gmx:100801924 236.498