Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1427g00013 ATGAGCAATGTCTGTGCAGAACAGCATCACAAGTTTCAACATACCCACCAACTCCTCTCCCTTAAGAAATCACTAAGAGACATTGACATCCCACCGAGGAAGCTCCTCACCCGCCGCGCCGCCGCCGTACACGACGTCGCCGGCGCCGGCGACATTTTTTCCGATGAGACCCTCATGCAGAAATACCTCCCCCACAACAATCCGGTGGACTCCGATGAAGATTCCGACGACCCTTATTCCTCCGACCACTTCCGCATGTATGAGTTCAAGGTCCGGCGATGCACCCGCAGCCGGAGCCATGACTGGACCGACTGCCCTTTTGCTCACCCCGGCGAGAAGGCTCGCCGCCGTGACCCCCGGCGGTACCACTACTCCGGCACGGTGTGCCCGGAGTATCGCCGCGGCGGGTGCAGCCGCGGTGATTCCTGTGAGTTCTCCCACGGTGTTTTTGAGTGCTGGTTGCACCCTGCTAGGTATAGAACAGAAGCTTGCAAAGATGGGAAAAATTGCAAGCGAAAAGTTTGTTTCTTTGCACACACCACTCGCCAACTCAGGGTTTTGCCAGTGAATAATTCACATGACATGTTCTCATGCAACAACAATAACAACAACAACAACAAGAGCAAGTTTTTGAACCCTTCTTCGGGTTCAAACCATTGTTGTTTGTTTTGTCATTGCTCTAATTCCACTACTAGTGCTAGTGTTAATGCTAGTTCTACTTATTCACCAACTTCTACTTTGTTTGGCATGTCACATTTTTCTTCTCCACCATTGTCACCTTCTTCTAATTCCCCTTCTTCAACTTGCCATTCACCTTCTGTTTCTAGGTTTGTAGGGTCTGAAACATGTGGTGGTGGTGGAATGAACCATCATGGTGTTGTGAGCTATAAGGATGTGCTCACAGAGTTTATGTGCTCCTTAGAGAAACTGAGTTTTGGTGAGGCTTCTAATTCGCCTGTGTCTAATTGGGTTGATGTATCTTTCAACTCTGAGGATCAGCATCAGTTTTTCATTGTTTTGCCAACAACAGTGGCTTCTGGAAACTTTTCTAATGGGAAATATTCAACAAGCTGCAAGTTCTTGAGGGAGGAGAAAAGGGTTGTTGTTGATGATGTCACTGCCCCGGATCTCGGGTGGGTTAATGACTTGCTGATGTAG 1158 0.487 MSNVCAEQHHKFQHTHQLLSLKKSLRDIDIPPRKLLTRRAAAVHDVAGAGDIFSDETLMQKYLPHNNPVDSDEDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCSRGDSCEFSHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTTRQLRVLPVNNSHDMFSCNNNNNNNNKSKFLNPSSGSNHCCLFCHCSNSTTSASVNASSTYSPTSTLFGMSHFSSPPLSPSSNSPSSTCHSPSVSRFVGSETCGGGGMNHHGVVSYKDVLTEFMCSLEKLSFGEASNSPVSNWVDVSFNSEDQHQFFIVLPTTVASGNFSNGKYSTSCKFLREEKRVVVDDVTAPDLGWVNDLLM 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1427g00013 385 PANTHER UNKEMPT FAMILY MEMBER 47 384 IPR045234 -
Gabi1427g00013 385 Gene3D - 118 192 - -
Gabi1427g00013 385 SMART c3hfinal6 158 181 IPR000571 GO:0046872
Gabi1427g00013 385 SMART c3hfinal6 123 149 IPR000571 GO:0046872
Gabi1427g00013 385 ProSiteProfiles Zinc finger C3H1-type profile. 124 150 IPR000571 GO:0046872
Gabi1427g00013 385 FunFam Zinc finger CCCH domain-containing protein 66 81 149 - -
Gabi1427g00013 385 Pfam CCCH-type zinc finger 128 148 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1427g00013 Gabi-Chr1427 95205 96422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1427g00013 79 187 C2H2 Transcription Factor Family AT5G12850 64.220 8.17e-52 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi1427g00013 zf-CCCH_4 1.3e-06 CL0537