Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1427g00012 ATGACTGGCAGAGAAATCCTCCATAAGATCATGAAGGCGAAAGCAGGGTTTGGAACATCAGCATCAGACACAGGGAAAGGAAAAAGCAAAATATCAAATCATATTACACATGGCTTTCACTTGGTGAAGGGAAAATCAAGCCATCCTATGGAAGATTATTTGGTTTCAGAATTTAAGCAAGAAAAGGACAAAGAATTAGGTTTGTTTGCTATATTTGATGGCCACTTAGGCCATGATGTTGCAAGCTATTTGCAGAACCACCTTTTTGAAAACATCTTGAAACAGCATGACTTCTGGATTGAAACAAAAAGTGCAGTAAAGAGAGCTTATCTTGAAACAGATGAGGAAATATTGGAACAAGCACTTGTCTTGGGACGAGGAGGATCAACAGCAGTGACTGCAATACTAATTGATGGTCAGAAGCTTGTAATAGCAAATGTTGGTGATTCTCGAGCTGTTATTTCTGAGAATGGAAAGGCTAAGCAACTATCTGTTGATCATGAACCAAGCAAGGAAAAAATATATATTGAGAGCCGTGGTGGTTTTGTATCAAATATTCCAGGAGATGTCCCTCGTGTGGATGGACAACTGGCAGTAGCAAGGGCTTTTGGTGACAAGAGTCTGAAGATGCATCTTAGTTCAGAACCTGATGTGGTTGTACAGGAGGTAGACCAACATACAGAGTTTCTTATTCTGGCTAGTGATGGAATATGGAAGGTTATGTCAAACCAAGAAGCAGTGGATTCTATTAGACAAATAAAGGATGCTCAGGCTGCAGCAAAGCACTTGATAGAAGAGGCTGTTTCCAAGAAAAGTAAGGATGACATATCCTGCATAGTTGTCAAGTTCCAACAATGA 858 0.3998 MTGREILHKIMKAKAGFGTSASDTGKGKSKISNHITHGFHLVKGKSSHPMEDYLVSEFKQEKDKELGLFAIFDGHLGHDVASYLQNHLFENILKQHDFWIETKSAVKRAYLETDEEILEQALVLGRGGSTAVTAILIDGQKLVIANVGDSRAVISENGKAKQLSVDHEPSKEKIYIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKMHLSSEPDVVVQEVDQHTEFLILASDGIWKVMSNQEAVDSIRQIKDAQAAAKHLIEEAVSKKSKDDISCIVVKFQQ 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1427g00012 285 CDD PP2Cc 43 283 IPR001932 -
Gabi1427g00012 285 SMART PP2C_SIG_2 47 283 IPR001932 -
Gabi1427g00012 285 Gene3D - 18 285 IPR036457 -
Gabi1427g00012 285 ProSiteProfiles PPM-type phosphatase domain profile. 36 283 IPR001932 -
Gabi1427g00012 285 FunFam Probable protein phosphatase 2C 39 26 284 - -
Gabi1427g00012 285 Pfam Protein phosphatase 2C 46 276 IPR001932 -
Gabi1427g00012 285 SUPERFAMILY PP2C-like 32 284 IPR036457 -
Gabi1427g00012 285 SMART PP2C_4 26 281 IPR001932 -
Gabi1427g00012 285 PANTHER PROTEIN PHOSPHATASE 30 283 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1427g00012 Gabi-Chr1427 86442 88704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1427g00012 25 284 PP2C-type Phosphatase Gene Family AT4G28400 76.538 9.98e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1427g00012 K17506 - gmx:100819846 495.738