Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1427g00009 ATGGGTCGCTTGCATGTTTGGATTTTCGTCTTGTTCATATTTGTGTTTGTAGAACTTCAGGAAATTCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAGACACGAACTGTTATGGAATGCTTGCACCGGTTTTGCAGAGAATGCATTGACAAGTCGATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGCACGCACTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCAAACTTCGATGCCCTAATTGCAGCTTTATATTCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGACAAGAACCGCAATAAGCTGATTCAAGCTTCAATTGCAAAAGTAGTTCAACGGCAATCTGAAGCACTGGTTAAGAGACGTAAAGATACACCAGGTACATTTGTAACAAGATCACAGCGCAATCAAAGGAATGTTCTTTCTAGGAGACAAAACCAAGTGATTGATATTCAAGGATCTGAAAATAATGAGGAAAATGACAAAAATGAAAAGGACTCATCTTCCGCCGATGAGGGATGCACAGAACTCAGGCAGAGAAAGCGGAAGAGGCGGAACAGAGCTCGCCCGTGTCAGCCAACATCATCGACAGCAAGTCCTGATGGTGGATGTGCAGAAAGTGATATGGATATAAGCAGAGATAATCGAGGAATTTCGTCAAGGCAGGTGTCAAAACCTCAAAAACTTACTTGGGGAAGGGGTGGTTTTAGGAGTCACACACGGCATGGCAGTGGCAGTGGTAGCAATAGCAAAAGTTCCCGCAAGGGTCGCTTGGCTAAGTTGGTTGATCATCTCCATAGCTTGGATGAAAACTCCGAGTTAGATGTCCATCTCATGCTTTTTTCTTTGGACAAACAAAGTACACCAAGTTTGCAGCAGCCACACCTTAGCTGTCCGCCAACGTTGTTTGTGAAGCACCTTTGTGAATATGTTGCTTGTCAGATACCTTTGACAGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCTGCAGTACATTTTGTGATAAGTCAGGTGATGAGACTTCATCCTCTGGTGAGCTATCAACGCTGGTTATAGATCCTAGCAAAGATGAACTGGAAACTTTGCAAGGGCATGAATCTCTGGCAGAGCTTAAATCAAAATGCATGTCTAAAAGGGAGCATTTGATTCTGGCATACAGGCGGAAGGAGTGA 1212 0.434 MGRLHVWIFVLFIFVFVELQEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNFDALIAALYSDIEKYEEEELEFREEDKNRNKLIQASIAKVVQRQSEALVKRRKDTPGTFVTRSQRNQRNVLSRRQNQVIDIQGSENNEENDKNEKDSSSADEGCTELRQRKRKRRNRARPCQPTSSTASPDGGCAESDMDISRDNRGISSRQVSKPQKLTWGRGGFRSHTRHGSGSGSNSKSSRKGRLAKLVDHLHSLDENSELDVHLMLFSLDKQSTPSLQQPHLSCPPTLFVKHLCEYVACQIPLTVEEVEILAVKGCCSTFCDKSGDETSSSGELSTLVIDPSKDELETLQGHESLAELKSKCMSKREHLILAYRRKE 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1427g00009 403 CDD RING-HC_RING1-like 25 90 - -
Gabi1427g00009 403 MobiDBLite consensus disorder prediction 167 191 - -
Gabi1427g00009 403 ProSiteProfiles Zinc finger RING-type profile. 28 68 IPR001841 -
Gabi1427g00009 403 Pfam Zinc finger, C3HC4 type (RING finger) 27 67 - -
Gabi1427g00009 403 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Gabi1427g00009 403 PANTHER OS11G0578200 PROTEIN 14 402 IPR044592 -
Gabi1427g00009 403 MobiDBLite consensus disorder prediction 253 267 - -
Gabi1427g00009 403 SMART ring_2 28 67 IPR001841 -
Gabi1427g00009 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 91 IPR013083 -
Gabi1427g00009 403 MobiDBLite consensus disorder prediction 130 268 - -
Gabi1427g00009 403 Coils Coil 87 117 - -
Gabi1427g00009 403 SUPERFAMILY RING/U-box 18 99 - -
Gabi1427g00009 403 MobiDBLite consensus disorder prediction 141 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1427g00009 Gabi-Chr1427 62757 67984 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1427g00009 20 91 C3H Transcription Factor Family AT3G23060 34.667 1.20e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1427g00009 K10695 - gmx:100801738 606.675