Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1427g00007 ATGTTCTTATGCACTGTCAAAATCTTCTCCAAGTTTAGAGCATATCCGGTGTTCATTGCTGATGGTACTCCATCGCCGTTGAAATCAGAGGTTAGGATTTTGAGATATTGCAAGTTTTGTGGCATTGATCTGACTAGCTTTCCAGGGCTTAAAGAGGGTGTTTCAATTGAAAGGAATAAAACGTTTTTAAGTTGGGTTCAAGAATGTGTGAAATTTTTTAAGCTACTTGGAGTGCCTGTATTAGAGGCTGAAGCACTCTGTGCTGAATTAAATAGAGAAAGTCATGTATATGCTTACATCACACCAAACAGTGATACATTCCTTTGTGGGGCCAAACATGTTATAAGACGTTTCAATTGTTCCAAGTTCAAAGAACCATTTGAATGCTACCATATGTCAGAAATTGAAGCTGGTCTTGGGTTGAAGAGGAGACACTTAATAGCTATCTCTCTGTTGGTTGGATATGATCATGATATAAATGGTGTTCAAGGGATTGAGCTTGACTCTGCTTTTCAATTTGTTCGAGCTTTTAGTGAAGATGATAATAAATTGGTTATTTACATGGTATCAGAGCGTCAATGTCTCAGGTTCAATCCTCACCCCCTCCCCCCCAATTTTCTTTGTGGAATTTCTTAG 636 0.3836 MFLCTVKIFSKFRAYPVFIADGTPSPLKSEVRILRYCKFCGIDLTSFPGLKEGVSIERNKTFLSWVQECVKFFKLLGVPVLEAEALCAELNRESHVYAYITPNSDTFLCGAKHVIRRFNCSKFKEPFECYHMSEIEAGLGLKRRHLIAISLLVGYDHDINGVQGIELDSAFQFVRAFSEDDNKLVIYMVSERQCLRFNPHPLPPNFLCGIS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1427g00007 211 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 206 IPR006084 -
Gabi1427g00007 211 Pfam XPG I-region 81 156 IPR006086 GO:0004518
Gabi1427g00007 211 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 16 35 IPR006084 -
Gabi1427g00007 211 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 161 IPR006084 -
Gabi1427g00007 211 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 90 110 IPR006084 -
Gabi1427g00007 211 SUPERFAMILY PIN domain-like 4 156 IPR029060 -
Gabi1427g00007 211 Gene3D - 1 140 - -
Gabi1427g00007 211 SMART xpgineu 74 141 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1427g00007 Gabi-Chr1427 56399 57034 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1427g00007 1 175 Core DNA Replication Machinery Family AT5G26680 28.877 1.97e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1427g00007 K15338 - qsa:O6P43_017544 226.098