Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1427g00006 ATGGCCACGCTCCAGAGCTTCCCCAGTTTCAGAATCGCTCAACATGATCCTCTCTTACCTTTCCTCTGGTCTATCAGGAAAGCTCTAGAAGATTCCAACAATTCAGGTCAGAATCTCATTAAGTTACTCAGCGATTGCATCAGAAACTTCAAGGACAGTGACCGGTACCGAAACGACGTCAGATTTCTCAAGATTTGGCTCCTCTATATGGGAGTTAGTGCAGATTTTGATAGTGTATTCAAAGAAATGCTGGATAGTGATGTATGTGCCAATAATTCTTCACTTTATGTGTGGTCTGCGTGTTTTTTTGAATTGAAGGGAAGATTGCGCGATGCCCTCACCGTCTATCAGCTCGGCATTTCAAGGAATGCGGAGCCAGTTGAGTGGTTGAAGAAGGCGCACACCTTATTTCTCAAAAGGATTTCTGAAATATCGAATGCGGCTTCAAGTCAGAAGGTTGATTATAAAGAATCCAAGAAATTGGAACATAGTGCCATTAATCCATGGGGCACCTCCACAATGGATGACCTGCTGAAGAAGATATATCCATTATTTACAAAATTTGACGGGTATTATTCGAGCACTAAACCTTACGCAGGAAAAGTGGCCTTATCTACTTTGAAGAGTTCATCGAGGAATAAAGTTATAGAGATAGGTGGAAAGAAGTACCATATCAAGGGTTGTGCTGGACAGGGTGGTTTTGCTCAAGTATATAAGGCATATGTCAACAGTGATCCTGACAATGTTGTTGCACTAAAGATACAAAAGCCAGCTTTCCCTTGGGAGTTTTACATGTATCGTCAGCTTGATCAGCGCATCTTAGGCAGAGAAAGGTCAAGCTATGGTTTTGCTCATAGAATTCATCTCTATTCTGACTATAGCATACTTATCTGTGACTATTTAGCTCATGGGACGCTACAGGATGTCATAAACTCATACGCGGTCATAGGAAAATCCATGGAAGAAGTCTTATGCATTTATTACACAACAGAAATGTTACACATGGTTGAAACTTTGCATGATGTTGGCTTGATTCATGGGGATTTCAAGCCTGATAATCTGCTTATTCGCTATGCTAGGGGTGACCTTACAGAAGATGGGCTCTTGGACCGAAGTGGTCCTTGGTGTGATCAGGGTCTTTGCCTTGTTGACTGGGGAAGAGGGATTGATCTGCATCTCTTTCCAGATAACACAATATTTAACGGAGATTGCAGAACTTCTGGTTTTCGCTGCATTGAGATGCAAGAGGATAAACCGTGGAAATTTCAGGTAGACGCATATGGCCTATGTGCTGTTGTCCATACGATGTTGCATAACAAATATATGGATATCGTCAAAAAAGAATCATCTGATAGGGGCTACGAGTATCTTCCTAGACTACCCTTTAAACGTTACTGGAATGTTGAACTCTGGAAGACTTTCTTCACTAAGATGCTAAATCAATACCCCGGGAATGATGATAGAAGGTTGCTACAGGACTTGAAGAAGTCCTTCCAGGACTATATGAGCTCCAATCCCCAGCTTATAAAGAAACTAAAAGATTTACTCGCGAAACAAAGGGCTTCCTTGTGTTCTGCTTAG 1581 0.4175 MATLQSFPSFRIAQHDPLLPFLWSIRKALEDSNNSGQNLIKLLSDCIRNFKDSDRYRNDVRFLKIWLLYMGVSADFDSVFKEMLDSDVCANNSSLYVWSACFFELKGRLRDALTVYQLGISRNAEPVEWLKKAHTLFLKRISEISNAASSQKVDYKESKKLEHSAINPWGTSTMDDLLKKIYPLFTKFDGYYSSTKPYAGKVALSTLKSSSRNKVIEIGGKKYHIKGCAGQGGFAQVYKAYVNSDPDNVVALKIQKPAFPWEFYMYRQLDQRILGRERSSYGFAHRIHLYSDYSILICDYLAHGTLQDVINSYAVIGKSMEEVLCIYYTTEMLHMVETLHDVGLIHGDFKPDNLLIRYARGDLTEDGLLDRSGPWCDQGLCLVDWGRGIDLHLFPDNTIFNGDCRTSGFRCIEMQEDKPWKFQVDAYGLCAVVHTMLHNKYMDIVKKESSDRGYEYLPRLPFKRYWNVELWKTFFTKMLNQYPGNDDRRLLQDLKKSFQDYMSSNPQLIKKLKDLLAKQRASLCSA 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1427g00006 526 SUPERFAMILY Protein kinase-like (PK-like) 220 503 IPR011009 -
Gabi1427g00006 526 SMART serkin_6 223 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1427g00006 526 FunFam Mitotic checkpoint serine/threonine-protein kinase BUB1 221 523 - -
Gabi1427g00006 526 ProSiteProfiles Protein kinase domain profile. 223 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1427g00006 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 344 356 IPR008271 GO:0004672|GO:0006468
Gabi1427g00006 526 ProSiteProfiles BUB1 N-terminal domain profile. 1 158 IPR013212 -
Gabi1427g00006 526 Gene3D - 10 158 - -
Gabi1427g00006 526 SMART mad3_bub1_i 2 120 IPR013212 -
Gabi1427g00006 526 Gene3D Transferase(Phosphotransferase) domain 1 220 523 - -
Gabi1427g00006 526 Pfam Protein kinase domain 223 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1427g00006 526 Pfam Mad3/BUB1 homology region 1 14 120 IPR013212 -
Gabi1427g00006 526 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 151 520 IPR015661 GO:0007094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1427g00006 Gabi-Chr1427 47098 51428 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1427g00006 217 356 MAP Kinase Kinase Kinase Kinase AT3G15220 28.082 3.23e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK BUB Gabi1427g00006 Pkinase 4.8e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1427g00006 K02178 - gmx:100783171 917.531