Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1427g00004 ATGGCTTCAGCTTCATCTTCTTATTCCTTTACCACTTTTGTGCTATTCCTCCTTTTTCTGCATTTGTCTTGTTTCTTCAACAACCTTAATGCAAAGCACATTATGGCCAACACTCACAACCGCCAGCACCAGCACAAGCACCATAACAGGAACCACAACACCCAAAATCCTCCTTTAAACCCAAGGCTTCACCGTGCTTTTCTTGGACTCCAAGCATGGAAACGTGTGATTTACTCAGACCCAAATAACTTCACTACCAATTGGGTAGGTCCTTCAGTTTGCAACTATACTGGTGTATACTGTGCTCCATCTCTAGATGACCCTAAAGTAACAGTTGTAGCTGGCATTGACCTTAACTTCGGAGACATAGCTGGGTTCCTACCTAATGAGTTAGGCCTACTCTCTGACCTTGCACTCATCCACCTTAATAGCAACCGTTTTTGTGGCATCCTTCCATTGACCTTAAGCAATCTTACTCTACTCTATGAGCTTGATCTTAGCAACAACAGATTTGTTGGACCTTTTCCTTTTGTTGTTCTTTCCCTTCCTAGCCTCCAATATCTTGACCTTCGTTACAATGAATTTGAAGGGCCATTGCCTCCTCAACTTTTCAACAAAACTTTTGATGCTATTTTTGTTAATAACAACCGCTTCACAAATTCTATTCCAACAAATCTAGGCCAAAGCTCAGCTTCTGTTGTGGTCTTTGCTAATAACAAATTTGGAGGATGTTTGCCTGAAAGCATTGTAAACTTTGCTGACACTTTGGAAGAACTTGTCTTAATCAACAACAGTTTGTCAGGTTGTTTGCCACAGCAAGTTGGTTTTCTCTACAAATTAAGAGTATTGGATGTGAGTTTCAACAACATTGTTGGTCCCATACCTTATAGCCTTGCAGGGTTGTCACATTTAGAGCAGCTTAATTTTGGCCATAACATGATGAGTGGCATAGTCCCTATGGGAATTTGTGAGTTGCCAAGCTTGGCAAACTTCACATTTTCTTATAACTTCTTCTGTGAAGAAGAGGGTATTTGTCAGAACTTGACATCAAAGCATATAGTGTTTGATGATCGTAGAAACTGTTTGCCAGAGAAGCCATTGCAAAGGAGCAAAAAGGAATGTGATGCCAAACTTGAGCACCCTGTTGACTGCTATGAACTTTGCTGTCCTAAGGATGGTTTTGGAACCAATATCAGTGCTGGTTCCGTGGCTATCCCACCTGCATCAATGCCTGTTTCTGCACCTCTTCTTGCACCAAGCTACCCATGA 1269 0.4161 MASASSSYSFTTFVLFLLFLHLSCFFNNLNAKHIMANTHNRQHQHKHHNRNHNTQNPPLNPRLHRAFLGLQAWKRVIYSDPNNFTTNWVGPSVCNYTGVYCAPSLDDPKVTVVAGIDLNFGDIAGFLPNELGLLSDLALIHLNSNRFCGILPLTLSNLTLLYELDLSNNRFVGPFPFVVLSLPSLQYLDLRYNEFEGPLPPQLFNKTFDAIFVNNNRFTNSIPTNLGQSSASVVVFANNKFGGCLPESIVNFADTLEELVLINNSLSGCLPQQVGFLYKLRVLDVSFNNIVGPIPYSLAGLSHLEQLNFGHNMMSGIVPMGICELPSLANFTFSYNFFCEEEGICQNLTSKHIVFDDRRNCLPEKPLQRSKKECDAKLEHPVDCYELCCPKDGFGTNISAGSVAIPPASMPVSAPLLAPSYP 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1427g00004 422 SUPERFAMILY L domain-like 71 351 - -
Gabi1427g00004 422 Gene3D Ribonuclease Inhibitor 232 370 IPR032675 -
Gabi1427g00004 422 MobiDBLite consensus disorder prediction 39 58 - -
Gabi1427g00004 422 Gene3D Ribonuclease Inhibitor 68 231 IPR032675 -
Gabi1427g00004 422 FunFam Leucine-rich repeat extensin-like protein 1 67 228 - -
Gabi1427g00004 422 Pfam Leucine rich repeat 279 336 IPR001611 GO:0005515
Gabi1427g00004 422 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 17 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1427g00004 Gabi-Chr1427 34057 35325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1427g00004 43 391 Leucine-rich Repeat extension Gene Families AT3G24480 54.802 7.98e-136 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1427g00004 - - gmx:100782629 680.633