Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1427g00003 ATGGTTTGTTTGGGGTTTCATATGGTTGAGGTTGGCACTGAAAGATTGGAGCTTTGGTTGGTTATCAGGAGTAGAATGGGGATTTTGTTGAGGATTGCATTTGGGTGGTGTGTGTTTCTGTTGTTTCTTAATCCAGTGGCAAGTCTGAGACCCTTAAGGGATAGAACTAGCTCGTGGGGCGATGAGTGGCTTTTTACAAGAAAAGACGAAAGTGACTTAGGTCCATTTTCACAATGGAACATAACTGGAACTTACAAAGGGGCTTGGAAGTTTTTAGATATCACAAATGGCTCTGCCAAAATTCCAGATATCAGAAAAACAAATGGAAATTCTGTAATTGAATTAGTTAGTGCGCCCACAAAAATAACTGGTGTACATTATGTGCAGGGGGTAGTTATATTCCATGATGTGTTTGACAACGAATACAATGTTGGTGGTGCTCAAATCAAAGTAGAAGGTGTATATATATGGCCTTTTAGACAGCTTCGACTGGTAGCCAACAGTGGAAAAGAGGGAGGCCTGAATCAGGATGAAGATTATATTTTATCCAACCCATATCATCTGCTTGGAGTTTTCTCATCTCAAGTATTCCAAGAATCTTCGCGGCACAAGTTGTGGAAAAGAAAGCATTCTCCATTGCATGGCATGGAGAAACATTGTAATGTAGAAATTGCTGCACAGGTTTCACGCTTGTCATCATCAAAACATGGGGAGCATGATTCTTTTCGGCTAGAAGGGTTAATGGAGAGTCCATCGGTGGATGACGATGGGGACTGCTTCTCACCTTTACAATTAAATGCAACATCTATTAACATTGAAGTCTACTATAATAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTCTCATTCTTGCAAGTTCTTCTATTGATTCGGCAAATGGAGCATAGCAACACCCAATCTGGGGCTGCTAAGGTCTCAATATTAATGATTGGTCAACAAGCTATAATGGATGCTTATCTTTGCCTTTTACATCTGACAGCAGGAATACTAGTTGAATCCTTGTTCAACGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTTTTCTCAATATTTGAGATGAGATATCTCCTTGCCATCTGGAAGGCAAATAGGCCTTCGAGTAACGGTGAAGGTTGGGAGATAATGAGGCGCGAGCTTTCAGTTTTATACAGCCGTTTCTATGGGATCCTGTTGGGAGGCATTCTGCTCATGTATGAGTTCCATAATTATTTGAGACCTATTCTTCTTCTTGTATACTCCTTTTGGATACCTCAGATAATCACCAATGTTGTTCGCGATTCGCGCAAACCATTGCATCCTCATTACATCTTGGGCATAACTGTTACTCGGCTAGCAATCCCATTATATATTTTTGGTTGTCCTAACAACTTCGTTCGGATAGAGCCTGATCAGAGCTGGTGTGTTTGTTTAGCTGTATTTGTTGTACTTCAAGCTGCAATTCTCCTACTTCAGCACCATCTTGGGTCCCGATGGTTCATTCCTCATCAGATTCTACCTGAAAGATACAGCTATCATAGGAGGTTTGCTCAAGATACAAGTCATGCCACAGACTGTGTTATTTGCATGACAGCCATTGATCTTGCTCCGCGATCCAATGATTGCATGGTGACTCCTTGTGATCATTTTTTTCATTCTGGCTGTTTGCAAAGATGGATGGATGTAAAGATGGAGTGCCCAACTTGCCGGCGCCCACTTCCACCTGCATGA 1734 0.4141 MVCLGFHMVEVGTERLELWLVIRSRMGILLRIAFGWCVFLLFLNPVASLRPLRDRTSSWGDEWLFTRKDESDLGPFSQWNITGTYKGAWKFLDITNGSAKIPDIRKTNGNSVIELVSAPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIKVEGVYIWPFRQLRLVANSGKEGGLNQDEDYILSNPYHLLGVFSSQVFQESSRHKLWKRKHSPLHGMEKHCNVEIAAQVSRLSSSKHGEHDSFRLEGLMESPSVDDDGDCFSPLQLNATSINIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKANRPSSNGEGWEIMRRELSVLYSRFYGILLGGILLMYEFHNYLRPILLLVYSFWIPQIITNVVRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFVRIEPDQSWCVCLAVFVVLQAAILLLQHHLGSRWFIPHQILPERYSYHRRFAQDTSHATDCVICMTAIDLAPRSNDCMVTPCDHFFHSGCLQRWMDVKMECPTCRRPLPPA 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1427g00003 577 ProSiteProfiles Zinc finger RING-type profile. 527 571 IPR001841 -
Gabi1427g00003 577 SMART ringv_2 526 571 IPR011016 GO:0008270
Gabi1427g00003 577 SMART ring_2 527 570 IPR001841 -
Gabi1427g00003 577 CDD RING-H2_TUL1-like 521 576 - -
Gabi1427g00003 577 FunFam E3 ubiquitin-protein ligase, putative 513 577 - -
Gabi1427g00003 577 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 577 IPR013083 -
Gabi1427g00003 577 PANTHER RING ZINC FINGER PROTEIN 134 576 - -
Gabi1427g00003 577 SUPERFAMILY RING/U-box 526 576 - -
Gabi1427g00003 577 Pfam Ring finger domain 526 571 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1427g00003 Gabi-Chr1427 22656 33111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1427g00003 527 574 C3H Transcription Factor Family AT4G12190 39.583 6.57e-09 51.2