Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1426g00010 ATGGATTTCATTGAAGGCGTGGGAGAGAGCTCCTCGCCACCGCGCAACTTCAGCGGTTTCGGCAACTACGACGTGAGGAACGATGTGTACAATCGCTTAGTGGAAACCGGTCACGATCAAGCAGTGTCGAACCCCGATTTTCGAGAACAGTTGGAGGCTCACTTCAATCGCTTGCCTCCAAGTTATGGGCTTGATGTTAATATGGATAGAGCTGAAGATGTTCTATTGCATCAGAGTCTTCTTACATTGGCAAGAGACCCTGAAAAGCGCCCTGTCTTCCATGTCCGCTTCTTGGAGAATATTTCTACTCAAACAGATGGTGAAGATCAACAAATTGTAAGTACTCAATCTAGCCCAAGGCCATCTTTTCTTACAACTAATGGGGGAGCAGTATCATCTCATAAGAGAACTAGGGATCATGCCATTGACTTTGAGCCTTGCTCCAAGCTTGAGGACCTAAATTTGGATGTTAGAAAGAACTCCAAGGAGATTGAGGGAAGATTTCTCACTGACAACTTTTCCCAGAGGCAGGAATATTCAAATGTCCCAATTCATGAAGTAATATTTTCCACCATCGACAAGCCAAAGCTTTTAAGCCAGTTGTCGGCTTTGCTGTCTGATATTGGGCTTAACATTCGTGAAGCACACGTTTTTTCCACAACTGATGGTTACTCCCTCGATGTATTTGTGGTGGACGGATGGCCAATAGAGGGGTCATGGTCTCGTTCTTCAAATTCCTATTTGGCTGTGGAAAAACCCTTAGCAGCAGAGGCAACATCTGGAGATTGGGAAATAGATAGGAAGTTATTGAAGATAGGAGAACGAATAGCATCTGGATCCGGTGGAGATTTGTATCGAGGAGTTTATCTTGGTCAAGATGTTGCTGTCAAGGTTCTGAGGTCTGAGCAATTGAATGATGCTTTAGAGGATGAGTTTTCTCAAGAAGTGGCAATCTTGAGGCAGGTAAATCATAACAATGTTGTTCGTTTCATTGGTGCATGTACAAAGTCTCCACATTTGTTTATAGTAACAGAGTATATGCCTGGAGGAAGTCTGTATGATTACCTGCACAAAAGTCATAATGTCTTGGAGCTGTCTCGATTACTAAATATTGTGATTGATGTTAGCAAGGGTATGGAGTATTTGCATAGAAACAACATAATTCACAGGGATCTGAAGACGGCAAATCTGCTGATGGATACACACAATGTTGTTAAAGTAGCAGATTTTGGAGTTGCTCGGTTCCTAAATCAAGGGGGAGTGATGACAGCAGAAACTGGAACATATAGATGGATGGCGCCAGAGGTTATAAACCACCAACCGTATGATCAGAAAGCAGACGTGTTCAGCTTTTCCATAGTACTATGGGAGTTAGTGACATCAAAGGTACCATATGATGCTATGACTCCACTACAAGCTGCCTTGGGTGTGAGACAGGGTCTACGCCCAGAACTTCCAAAGCATGGGCACACTAAACTATTAGATTTGATGCAAAGATGTTGGGAAGCAGTTCCAATCAACCGGCCATCCTTCCACGAGATAACAGTCATACTTGAGAATCTTTTGCAAGAAGTTGAGCTGTTCAAATTGCAGAATGATTCACAAGCTAATGATGATGCTTGA 1623 0.4313 MDFIEGVGESSSPPRNFSGFGNYDVRNDVYNRLVETGHDQAVSNPDFREQLEAHFNRLPPSYGLDVNMDRAEDVLLHQSLLTLARDPEKRPVFHVRFLENISTQTDGEDQQIVSTQSSPRPSFLTTNGGAVSSHKRTRDHAIDFEPCSKLEDLNLDVRKNSKEIEGRFLTDNFSQRQEYSNVPIHEVIFSTIDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPIEGSWSRSSNSYLAVEKPLAAEATSGDWEIDRKLLKIGERIASGSGGDLYRGVYLGQDVAVKVLRSEQLNDALEDEFSQEVAILRQVNHNNVVRFIGACTKSPHLFIVTEYMPGGSLYDYLHKSHNVLELSRLLNIVIDVSKGMEYLHRNNIIHRDLKTANLLMDTHNVVKVADFGVARFLNQGGVMTAETGTYRWMAPEVINHQPYDQKADVFSFSIVLWELVTSKVPYDAMTPLQAALGVRQGLRPELPKHGHTKLLDLMQRCWEAVPINRPSFHEITVILENLLQEVELFKLQNDSQANDDA 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1426g00010 540 SMART serkin_6 270 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1426g00010 540 ProSiteProfiles ACT domain profile. 186 274 IPR002912 -
Gabi1426g00010 540 SUPERFAMILY ACT-like 185 235 IPR045865 -
Gabi1426g00010 540 Coils Coil 518 538 - -
Gabi1426g00010 540 ProSiteProfiles Protein kinase domain profile. 270 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1426g00010 540 Gene3D Transferase(Phosphotransferase) domain 1 348 539 - -
Gabi1426g00010 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 387 399 IPR008271 GO:0004672|GO:0006468
Gabi1426g00010 540 FunFam Serine/threonine-protein kinase isoform 1 260 348 - -
Gabi1426g00010 540 MobiDBLite consensus disorder prediction 105 137 - -
Gabi1426g00010 540 Gene3D Phosphorylase Kinase; domain 1 259 347 - -
Gabi1426g00010 540 PRINTS Tyrosine kinase catalytic domain signature 446 468 IPR001245 GO:0004672|GO:0006468
Gabi1426g00010 540 PRINTS Tyrosine kinase catalytic domain signature 427 437 IPR001245 GO:0004672|GO:0006468
Gabi1426g00010 540 PRINTS Tyrosine kinase catalytic domain signature 489 511 IPR001245 GO:0004672|GO:0006468
Gabi1426g00010 540 PRINTS Tyrosine kinase catalytic domain signature 344 357 IPR001245 GO:0004672|GO:0006468
Gabi1426g00010 540 PRINTS Tyrosine kinase catalytic domain signature 381 399 IPR001245 GO:0004672|GO:0006468
Gabi1426g00010 540 Pfam Protein tyrosine and serine/threonine kinase 270 516 IPR001245 GO:0004672|GO:0006468
Gabi1426g00010 540 CDD STKc_MAP3K-like 276 518 - -
Gabi1426g00010 540 MobiDBLite consensus disorder prediction 105 132 - -
Gabi1426g00010 540 SUPERFAMILY Protein kinase-like (PK-like) 250 524 IPR011009 -
Gabi1426g00010 540 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 213 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1426g00010 Gabi-Chr1426 150323 202252 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1426g00010 24 525 MAP Kinase Kinase Kinase AT4G35780 48.684 5.57e-170 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gabi1426g00010 PK_Tyr_Ser-Thr 7.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1426g00010 - - gmx:100782737 894.804