LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1426g00009	ATGGATTTCATTGAAGGCGTGGGAGAGAGCTCCTCGCCACCGCGCAACTTCAGCGGTTTCGGCAACTACGACGTGAGGAACGATGTGTACAATCGCTTAGTGGAAACCGGTCACGATCAAGCAGTGTCGAACCCCGATTTTCGAGAACAGTTGGAGGCTCACTTCAATCGCTTGCCTCCAAGTTATGGGCTTGATGTTAATATGGATAGAGCTGAAGATGTTCTATTGCATCAGAGTCTTCTTACATTGGCAAGAGACCCTGAAAAGCGCCCTGTCTTCCATGTCCGCTTCTTGGAGAATATTTCTACTCAAACAGATGGTGAAGATCAACAAATTGTAAGTACTCAATCTAGCCCAAGGCCATCTTTTCTTACAACTAATGGGGGAGCAGTATCATCTCATAAGAGAACTAGGGATCATGCCATTGACTTTGAGCCTTGCTCCAAGCTTGAGGACCTAAATTTGGATGTTAGAAAGAACTCCAAGGAGATTGAGGGAAGATTTCTCACTGACAACTTTTCCCAGAGGCAGGAATATTCAAATGTCCCAATTCATGAAGTAATATTTTCCACCATCGACAAGCCAAAGCTTTTAAGCCAGTTGTCGGCTTTGCTGTCTGATATTGGGCTTAACATTCGTGAAGCACACGTTTTTTCCACAACTGATGGTTACTCCCTCGATGTATTTGTGGTGGACGGATGGCCAATAGAGGAAACAGATGGGTTGTATGACGCAATGGAAAAAGCTGTCGCGAGAAGTGAGGGGTCATGGTCTCGTTCTTCAAATTCCTATTTGGCTGTGGAAAAACCCTTAGCAGCAGAGGCAACATCTGGAGATTGGGAAATAGATAGGAAGTTATTGAAGATAGGAGAACGAATAGCATCTGGATCCGGTGGAGATTTGTATCGAGGAGTTTATCTTGGTCAAGATGTTGCTGTCAAGGTTCTGAGGTCTGAGCAATTGAATGATGCTTTAGAGGATGAGTTTTCTCAAGAAGTGGCAATCTTGAGGCAGGTAAATCATAACAATGTTGTTCGTTTCATTGGTGCATGTACAAAGTCTCCACATTTGTTTATAGTAACAGAGTATATGCCTGGAGGAAGTCTGTATGATTACCTGCACAAAAGTCATAATGTCTTGGAGCTGTCTCGATTACTAAATATTGTGATTGATGTTAGCAAGGGTATGGAGTATTTGCATAGAAACAACATAATTCACAGGGATCTGAAGACGGCAAATCTGCTGATGGATACACACAATGTTGTTAAAGTAGCAGATTTTGGAGTTGCTCGGTTCCTAAATCAAGGGGGAGTGATGACAGCAGAAACTGGAACATATAGATGGATGGCGCCAGAGGTTATAAACCACCAACCGTATGATCAGAAAGCAGACGTGTTCAGCTTTTCCATAGTACTATGGGAGTTAGTGACATCAAAGGTACCATATGATGCTATGACTCCACTACAAGCTGCCTTGGGTGTGAGACAGGGTCTACGCCCAGAACTTCCAAAGCATGGGCACACTAAACTATTAGATTTGATGCAAAGATGTTGGGAAGCAGTTCCAATCAACCGGCCATCCTTCCACGAGATAACAGTCATACTTGAGAATCTTTTGCAAGAAGTTGAGAATGATTCACAAGCTAATGATGATGCTTGA	1659	0.4328	MDFIEGVGESSSPPRNFSGFGNYDVRNDVYNRLVETGHDQAVSNPDFREQLEAHFNRLPPSYGLDVNMDRAEDVLLHQSLLTLARDPEKRPVFHVRFLENISTQTDGEDQQIVSTQSSPRPSFLTTNGGAVSSHKRTRDHAIDFEPCSKLEDLNLDVRKNSKEIEGRFLTDNFSQRQEYSNVPIHEVIFSTIDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPIEETDGLYDAMEKAVARSEGSWSRSSNSYLAVEKPLAAEATSGDWEIDRKLLKIGERIASGSGGDLYRGVYLGQDVAVKVLRSEQLNDALEDEFSQEVAILRQVNHNNVVRFIGACTKSPHLFIVTEYMPGGSLYDYLHKSHNVLELSRLLNIVIDVSKGMEYLHRNNIIHRDLKTANLLMDTHNVVKVADFGVARFLNQGGVMTAETGTYRWMAPEVINHQPYDQKADVFSFSIVLWELVTSKVPYDAMTPLQAALGVRQGLRPELPKHGHTKLLDLMQRCWEAVPINRPSFHEITVILENLLQEVENDSQANDDA	552

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gabi1426g00009	552	CDD	STKc_MAP3K-like	293	535	-	-
Gabi1426g00009	552	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	404	416	IPR008271	GO:0004672\|GO:0006468
Gabi1426g00009	552	SMART	serkin_6	287	539	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gabi1426g00009	552	Gene3D	Phosphorylase Kinase; domain 1	276	364	-	-
Gabi1426g00009	552	FunFam	Serine/threonine-protein kinase isoform 1	277	365	-	-
Gabi1426g00009	552	Pfam	Protein tyrosine and serine/threonine kinase	287	533	IPR001245	GO:0004672\|GO:0006468
Gabi1426g00009	552	ProSiteProfiles	ACT domain profile.	186	260	IPR002912	-
Gabi1426g00009	552	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	220	541	-	-
Gabi1426g00009	552	PRINTS	Tyrosine kinase catalytic domain signature	463	485	IPR001245	GO:0004672\|GO:0006468
Gabi1426g00009	552	PRINTS	Tyrosine kinase catalytic domain signature	398	416	IPR001245	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1426g00009	Gabi-Chr1426	150323	202252	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1426g00009	24	550	MAP Kinase Kinase Kinase	AT4G35780	49.630	1.31e-179	516

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Gabi1426g00009		PK_Tyr_Ser-Thr	7.7e-71	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1426g00009	-		-	gmx:100782737	934.095

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