Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1426g00008 ATGGATTTCATTGAAGGCGTGGGAGAGAGCTCCTCGCCACCGCGCAACTTCAGCGGTTTCGGCAACTACGACGTGAGGAACGATGTGTACAATCGCTTAGTGGAAACCGGTCACGATCAAGCAGTGTCGAACCCCGATTTTCGAGAACAGTTGGAGGCTCACTTCAATCGCTTGCCTCCAAGTTATGGGCTTGATGTTAATATGGATAGAGCTGAAGATGTTCTATTGCATCAGAGTCTTCTTACATTGGCAAGAGACCCTGAAAAGCGCCCTGTCTTCCATGTCCGCTTCTTGGAGAATATTTCTACTCAAACAGATGGTGAAGATCAACAAATTGTAAGTACTCAATCTAGCCCAAGGCCATCTTTTCTTACAACTAATGGGGGAGCAGTATCATCTCATAAGAGAACTAGGGATCATGCCATTGACTTTGAGCCTTGCTCCAAGCTTGAGGACCTAAATTTGGATGTTAGAAAGAACTCCAAGGAGATTGAGGGAAGATTTCTCACTGACAACTTTTCCCAGAGGCAGGAATATTCAAATGTCCCAATTCATGAAGTAATATTTTCCACCATCGACAAGCCAAAGCTTTTAAGCCAGTTGTCGGCTTTGCTGTCTGATATTGGGCTTAACATTCGTGAAGCACACGTTTTTTCCACAACTGATGGTTACTCCCTCGATGTATTTGTGGTGGACGGATGGCCAATAGAGGAAACAGATGGGTTGTATGACGCAATGGAAAAAGCTGTCGCGAGAAGTGAGGGGTCATGGTCTCGTTCTTCAAATTCCTATTTGGCTGTGGAAAAACCCTTAGCAGCAGAGGCAACATCTGGAGATTGGGAAATAGATAGGAAGTTATTGAAGATAGGAGAACGAATAGCATCTGGATCCGGTGGAGATTTGTATCGAGGAGTTTATCTTGGTCAAGATGTTGCTGTCAAGGTTCTGAGGTCTGAGCAATTGAATGATGCTTTAGAGGATGAGTTTTCTCAAGAAGTGGCAATCTTGAGGCAGGTAAATCATAACAATGTTGTTCGTTTCATTGGTGCATGTACAAAGTCTCCACATTTGTTTATAGTAACAGAGTATATGCCTGGAGGAAGTCTGTATGATTACCTGCACAAAAGTCATAATGTCTTGGAGCTGTCTCGATTACTAAATATTGTGATTGATGTTAGCAAGGGTATGGAGTATTTGCATAGAAACAACATAATTCACAGGGATCTGAAGACGGCAAATCTGCTGATGGATACACACAATGTTGTTAAAGTAGCAGATTTTGGAGTTGCTCGGTTCCTAAATCAAGGGGGAGTGATGACAGCAGAAACTGGAACATATAGATGGATGGCGCCAGAGGTTATAAACCACCAACCGTATGATCAGAAAGCAGACGTGTTCAGCTTTTCCATAGTACTATGGGAGTTAGTGACATCAAAGGTACCATATGATGCTATGACTCCACTACAAGCTGCCTTGGGTGTGAGACAGGGTCTACGCCCAGAACTTCCAAAGCATGGGCACACTAAACTATTAGATTTGATGCAAAGATGTTGGGAAGCAGTTCCAATCAACCGGCCATCCTTCCACGAGATAACAGTCATACTTGAGAATCTTTTGCAAGAAGTTGAGCTGTTCAAATTGCAGAATGATTCACAAGCTAATGATGATGCTTGA 1674 0.4325 MDFIEGVGESSSPPRNFSGFGNYDVRNDVYNRLVETGHDQAVSNPDFREQLEAHFNRLPPSYGLDVNMDRAEDVLLHQSLLTLARDPEKRPVFHVRFLENISTQTDGEDQQIVSTQSSPRPSFLTTNGGAVSSHKRTRDHAIDFEPCSKLEDLNLDVRKNSKEIEGRFLTDNFSQRQEYSNVPIHEVIFSTIDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPIEETDGLYDAMEKAVARSEGSWSRSSNSYLAVEKPLAAEATSGDWEIDRKLLKIGERIASGSGGDLYRGVYLGQDVAVKVLRSEQLNDALEDEFSQEVAILRQVNHNNVVRFIGACTKSPHLFIVTEYMPGGSLYDYLHKSHNVLELSRLLNIVIDVSKGMEYLHRNNIIHRDLKTANLLMDTHNVVKVADFGVARFLNQGGVMTAETGTYRWMAPEVINHQPYDQKADVFSFSIVLWELVTSKVPYDAMTPLQAALGVRQGLRPELPKHGHTKLLDLMQRCWEAVPINRPSFHEITVILENLLQEVELFKLQNDSQANDDA 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1426g00008 557 CDD STKc_MAP3K-like 293 535 - -
Gabi1426g00008 557 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 223 541 - -
Gabi1426g00008 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672|GO:0006468
Gabi1426g00008 557 SMART serkin_6 287 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1426g00008 557 SUPERFAMILY ACT-like 185 252 IPR045865 -
Gabi1426g00008 557 ProSiteProfiles ACT domain profile. 186 260 IPR002912 -
Gabi1426g00008 557 Pfam Protein tyrosine and serine/threonine kinase 287 533 IPR001245 GO:0004672|GO:0006468
Gabi1426g00008 557 MobiDBLite consensus disorder prediction 105 137 - -
Gabi1426g00008 557 MobiDBLite consensus disorder prediction 105 132 - -
Gabi1426g00008 557 SUPERFAMILY Protein kinase-like (PK-like) 267 541 IPR011009 -
Gabi1426g00008 557 Gene3D Transferase(Phosphotransferase) domain 1 365 556 - -
Gabi1426g00008 557 ProSiteProfiles Protein kinase domain profile. 287 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1426g00008 557 Gene3D Phosphorylase Kinase; domain 1 276 364 - -
Gabi1426g00008 557 Coils Coil 535 555 - -
Gabi1426g00008 557 FunFam Serine/threonine-protein kinase isoform 1 277 365 - -
Gabi1426g00008 557 PRINTS Tyrosine kinase catalytic domain signature 361 374 IPR001245 GO:0004672|GO:0006468
Gabi1426g00008 557 PRINTS Tyrosine kinase catalytic domain signature 506 528 IPR001245 GO:0004672|GO:0006468
Gabi1426g00008 557 PRINTS Tyrosine kinase catalytic domain signature 444 454 IPR001245 GO:0004672|GO:0006468
Gabi1426g00008 557 PRINTS Tyrosine kinase catalytic domain signature 463 485 IPR001245 GO:0004672|GO:0006468
Gabi1426g00008 557 PRINTS Tyrosine kinase catalytic domain signature 398 416 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1426g00008 Gabi-Chr1426 150323 202252 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1426g00008 24 542 MAP Kinase Kinase Kinase AT4G35780 50.000 5.38e-178 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gabi1426g00008 PK_Tyr_Ser-Thr 7.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1426g00008 - - gmx:100782737 927.932