Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1420g00003 ATGGAGAACATTCTGGGTCTGATCAAACTTCGTATCAAAAGAGGCACTAATCTCACAGCTCGCGATTCTCGTACCAGTGACCCTTATGTCTTTGTCACCATGGGCGAACAGAAACTGAAAACTGGTGTTGTGAAAGATAACTGTAATCCTGAGTGGAATGAAGAATTGACACTTTATGTTAGGGATGTTAACATTCCGGTACATCTGGTGATTTGTGACAAAGACACTTTCACTGTGGACGACCAAATGGGAGATGCAGATATAGATATAAAACCATATCTTCAGTGTGTGAAGATGGGGTTGAACGAAGTCCCAGATGGCCATGTAATCAAGAAGGTTCAACCAGACAGGACTAACTGCCTTGCTGAAGAGAGCAGCTGCATATGGAAAAATGGAAAAATCATCCAAGAGATGAATTTAAGGTTGAGAAATGTTAAGTCTGGCGAAGTAACTGTGGAAATTGAGTGGATTAATGTTCCAGACTCCAAGGGCTTATCAGAGGTTGAGTTTTAG 513 0.4152 MENILGLIKLRIKRGTNLTARDSRTSDPYVFVTMGEQKLKTGVVKDNCNPEWNEELTLYVRDVNIPVHLVICDKDTFTVDDQMGDADIDIKPYLQCVKMGLNEVPDGHVIKKVQPDRTNCLAEESSCIWKNGKIIQEMNLRLRNVKSGEVTVEIEWINVPDSKGLSEVEF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1420g00003 170 Gene3D C2 domain 4 167 IPR035892 -
Gabi1420g00003 170 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Gabi1420g00003 170 SMART C2_3c 7 102 IPR000008 -
Gabi1420g00003 170 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 158 IPR035892 -
Gabi1420g00003 170 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
Gabi1420g00003 170 Pfam C2 domain 7 92 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1420g00003 Gabi-Chr1420 28208 30159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1420g00003 38 166 C2H2 Transcription Factor Family AT1G70790 55.725 1.88e-49 155