Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1419g00010 ATGGGGCTTCTTCCCAGAAAGTTGTTAACTGAACCTGACTGTGATTTCTTCTGTCATAAGGAACAGTCTTGTTCATCAGTATCTATTTGTGATGCTTGCCTCTCCGCCTGCTATAACTTTTACCCTCCACCACCACCACCAGGTTTATATAAAGATCAAAGCAAACACCACAAAATCTCAACCTATTTGATTATCACTATTGCTATTGCAGCTACTGCTTTCTTTGTTGTTTGCTGCTACGCCATCTATGCCAAGTTTTTCTCAGGTTGGAACAGGTCAAGGAGGAGAGGTTTATCACAGCAACAAACAGAAGATGATTTTGTTGATGAAGAACATGGTCCTGTTGTGGACCACCCCATCTGGTACATCCGCACCACTGGTCTTCAACAATCAATTATCAGTGCCATCACCGTTTGTAAGTATAAGAAAGGTGAAGGCTTGATTGAAGGAACAGATTGTTCTGTTTGTTTGAGTGAGTTTCAAGAGGATGAGAATCTAAGACTTTTGCCAAAGTGTAACCATGCTTTTCATTTGCCTTGTATTGATACTTGGCTTAGATCACATACCAATTGCCCCATGTGCCGGGCTCCTATTGTTACCAACCATGCAAGGATTCCATCTATGGAGCCTAATAATGTTTTTGATTCAAGTTCTGTGGAAAACAACACCCAGATGGAAGTTTTGGAAAATGGTGGTGGAATGGAAAATAGTGCTTCTCAGTTGAGGAATGGAGAAGAGGAACAAGGGCAAGAAGTTGAGGATATGAGAAGGGTATGTGAAAGTGAGAACTCAGCTGCAGATGTAGTAAACATACAGCCAAGAAGATCAGTGTCTTTGGATTCTTCTTCTGCTGCTAAGATCAGTCTTGCTCTCGCCACTGTTGAATCTCATGGGGAAGTCAATGAACAAATTGTTTCAAGGAGTGTTGCAAAAGGTAGTTCTTCTTCAAGGACAAGAAATCTTCTGAGTGCACCTAGTTCAATGAAGAGGTCACGATCCTTCAATGGAAAACATCTACTATCTTGGTATAGCCGCAGCCAAAAGAAGCCAAATGCTCCACTAAGAAGCTTTTGA 1074 0.4153 MGLLPRKLLTEPDCDFFCHKEQSCSSVSICDACLSACYNFYPPPPPPGLYKDQSKHHKISTYLIITIAIAATAFFVVCCYAIYAKFFSGWNRSRRRGLSQQQTEDDFVDEEHGPVVDHPIWYIRTTGLQQSIISAITVCKYKKGEGLIEGTDCSVCLSEFQEDENLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTNHARIPSMEPNNVFDSSSVENNTQMEVLENGGGMENSASQLRNGEEEQGQEVEDMRRVCESENSAADVVNIQPRRSVSLDSSSAAKISLALATVESHGEVNEQIVSRSVAKGSSSSRTRNLLSAPSSMKRSRSFNGKHLLSWYSRSQKKPNAPLRSF 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1419g00010 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
Gabi1419g00010 357 SMART ring_2 153 194 IPR001841 -
Gabi1419g00010 357 PANTHER RING-H2 FINGER PROTEIN ATL16 45 333 IPR044600 GO:0016567|GO:0016740
Gabi1419g00010 357 FunFam RING-H2 finger protein ATL54 128 201 - -
Gabi1419g00010 357 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Gabi1419g00010 357 Pfam Ring finger domain 152 195 IPR001841 -
Gabi1419g00010 357 MobiDBLite consensus disorder prediction 306 332 - -
Gabi1419g00010 357 SUPERFAMILY RING/U-box 147 202 - -
Gabi1419g00010 357 CDD RING-H2_EL5-like 152 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1419g00010 Gabi-Chr1419 160998 162745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1419g00010 53 206 C3H Transcription Factor Family AT1G72220 54.217 2.24e-50 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1419g00010 - - mtr:11411830 388.267