Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1419g00001 ATGAGTACCCTTCTTTACCCACGTATTCAACCTATTGTTTTGGAAGATAACGGAGAAGTTTCATTTAGAGGTGATGCCATCAAGTCAACCGAAAGTAGTGGAAGTATTCAGGGAGAGAAGGAAGGCATAACAGTAACATGGGAAGATTTGTGGGTCACTGTTTCAAATGGAAAGAAAAGGAAACCAATTCTTCAGGGTCTTACTGGTCAAGCCCAACCCGGAAGGCTTCTAGCTATAATGGGCCCTTCAGGTTGTGGAAAATCCACATTTCTTGATGCTTTAGCAGGAAGATTGAGCTCAAACTTAAAACGTACAGGGAATATTCTAATCAATGGCCACAAACAAGCACTGGCTTATGGAACATCAGGTTATGTAACACAAGATGATGCTATGCTGTCAAATTTAACGGCTGGGGAAACTTTGTACTACTCAGCTCAGCTCCAATTTCCAGATTCCATGTCCATAGCAGAGAAGAAGGAACGAGCAGAAATGACACTGAGAGAAATGGGTCTGCAAGATGCCATTAACACAAAGGTTGGAGGGTGGGGTGCTAAAGGCCTCAGTGGAGGACAAAAGAGGAGACTTAGCATTTGCATTGAGATCCTAACACGCCCGAGACTTCTATTCCTTGATGAACCAACAAGTGGACTTGATAGTGCAGCTTCATATTATGTTATGAGAAGAATTGCAAGTCTAAATCTAAGGGATGGAATTCTAAGGACTATTGTTACATCCATCCATCAGCCTAGTAGTGAAGTTTTTGAACTTTTCCATGACCTCTGTCTTCTGTCTTCTGGTGAAACTGTATATTTTGGTCCAGCCTCAGATGCAAATCAGTTTTTTGCTTTAAATGGTTTTCCTTGCCCAACACACCACAATCCTTCTGATCATTACTTGAGGATCATAAACAAAGATTTCGAACAGGACGCTGAAGAAGGCTTTGGCAAGGGAGCAACTACAGAAGAAGCAATCAGTATACTTGTAAAATCTTATGGATCATCTCAAATTAGAAACAAAGTTAAAATGGAAGTGGTAAAAATCAGTGAAAGTGATTCTGGTGCAATAGGGAAGAAGGGGATACACGCTGCATTCCTCACTCAATGCCTTGTTCTTATAAGAAGATCTTCCCTTCAATTGTTTCGCGACATAAGCAATTACTGGTTACGTTTATCTGTCTTTATTGTAATAGCTATAAGCATTGGCTCTATCTTCTATCACATTGGCTCAAGTAATGAATCTATTCAGGGGAGAGGTTCGCTGCTCACTTTTTTTATTTCAGTTCTGAGTTTCATGAACCTTATTGGTGGATTCTCTCCACTTCTGGAGGAAATGAAGGTATTTGAACGAGAGAGATTGAATGGGCACTATGGCATTACAGCTTTTCTCATAGGCAACATACTCTCTGTTGTTCCTTACATGCTAATGATTTCTCTAATTCCTGGAGGAATAGCTTACTACCTTTGTGGGTTGCACAAAGGACTAGAAAACTTTATGTACTTCACTTCTTTGCTATTCGCCATCATGATGTGGGTTGAGAGCCTTATGTTGGTTGTTGGTAGTGTCTCTCCCAATTATGTAATAGGCATGTTCATTGCTGGTGGAATTGCAGGACTCATGATCTTAACAGGTGGATTCTATCGACTGCCAAACGATATTCCAAAACCATTATGGAAATACCCTTTATACTATGTTTCTTTCCTCAAGTATGCCTTTCAAGGATCATTCAAGAATGAATTTGAAGGTTTAACATTTTCTATAGAACAAGATGGAGGCACCAAAACCATCAGTGGTAGACAAGTACTCATTGAGTCATGGCACGTCGAAATGGGTCACTCTAAGTGGGTTGATCTTGCCATCATGTTTGCAATGATTGTTCTGTATCGAGTTCTGTTCTTGGCCATCACTAAGAGCAAGGAGAAGCTGAAGCCATCAGTGCCTAAGAATACTGCTTTCCTAGCTCTTGGGGAAAATTTTGGAGAGAAGGAGGGCATAACAGTGACATGGGATGATTTATGTGTCACTGTTTCAAATGGAAAGAAAAGGAAAACAATGCTTCAGGGTCTTACTGGTTATGCCTTGCCAGGAAGGCTTCTGGCTATAATGGGTCCTTCAGGCAGTGGAAAATCCACTTTTCTTGATGCTTTAGCAGGAAGATTGAGCTCAAACATAAAACGTACAGGGAATATTCTAATCAATGGCCACAAACAAGTACTGGCTTATGGAACATCAGGCTATGTAACACAAGATGCTGCTATGCTGTCAAATTTAACGGCTGGGGAAACTTTGTACTACTCAGCTCAGCTCCAATTTCCAGATTCCATGTCCATAGCAGAGAAGAAGGAACGTGCAGAAATGACACTGAGAGAAATGGGTCTGCAAGATGCCATTAACACCAAGGTTGGAGGGTGGGGTGATAAAGGCCTCAGTGGAGGACAGAAGAGAAGACTTAGCATTTGCATTGAGATCCTAACACGCCCGAGACTTCTATTCCTTGATGAACCAACAAGTGGACTTGATAGTGCAGCTTCATATTATGTTATGAGAAGAATTGCAAGTCTAAATCTAAGGGATGGCATTCTAAGGACTATTGTTACATCCATCCATCAGCCTAGTAGTGAAGTTTTTGAACTTTTCCATGACCTCTGTCTTCTTTCTTCTGGTGAAACTGTATATTTTGGTCCAGCCCCTGATGCAAATCAGTTTTTTTCTTCAAAAGGTTTTCCTTGCCCGACACACCACAATCCCTCTGATCATTACTTGACGATCATAAACAAAGATTTCGAACAGGACGCTACAGAAGGCTTTGCAACTACGGAAGAAGCAATCGGTATCCTTGTAAATTCTTATGGATCGTCTCAAATTGGAAACAAAGTTAAAAAGGAAGTGGCAAAAATAAGTGAAAGTGATTCTGGCGCAATAGGGAAGAAGGGGATCCACGCTGCATTCCTCACTCAATGCCTTGTTCTTATAAGAAGATCTTCCCTTCAATTGTTTCGCGACATAAGCAATTACTGGTTACGTTTATCTGTCTTTATTGTAATAGCTATAAGCATTGGCTCTATCTTCTATCACATTGGCTCAAGTAATGAATCTATTCAGGGGAGAGGTTCGCTGCTCACTTTTTTTATTTCAGTTCTGACTTTCATGAACCTTGTTGGTGGATTCTCTCCACTGTTGGAGGAAATGAAGGTATTTGAACGAGAGAGATTGAATGGGCACTATGGCATTACAGTTTTTCTCATAGGCAACATACTCTCTGTTGTTCCTTACATGCTAATGATTTCTCTAATTCCTGGAGGAATAGCTTACTACCTTTGTGGGTTGCACAAAGGACTAGAAAACTTTATGTACTTCACTTCTTTGCTATTCGCCATCATGATGTGGGTTGAGAGCCTTATGTTGGTTGTTGGTAGTGTCTCTCCCAATTATGTAATAGGCATGTTCATTGCTGGTGGAATTGCAGGACTCATGATCTTAACAGGTGGATTCTATCGACTGCCAAACGATATTCCAAAACCATTATGGAAATACCCTTTATACTATGTTTCTTTCCTCAAGTATGCCTTTCAAGGATCATTCAAGAATGAATTTGAAGGTTTAACATTTTCTATAGAACAGGATGGAGGAACCAAAACCATCAGCGGTAGACAAGTACTCATTGAGGCATGGCACGTGGAAATGGGTCACTCTAAGTGGGTTGATCTTGCCATCATGTTTGCAATGATTGTTCTGTATCGAGTTCTGTTCTTGGCCATCACTAAGAGCAAGGAGAAGCTGAAGCCATCAGTGGTCCCCAAGCATAAATTTTCTCTTGAATTACCAGAAAGAGTGATCATTATATAG 3843 0.4067 MSTLLYPRIQPIVLEDNGEVSFRGDAIKSTESSGSIQGEKEGITVTWEDLWVTVSNGKKRKPILQGLTGQAQPGRLLAIMGPSGCGKSTFLDALAGRLSSNLKRTGNILINGHKQALAYGTSGYVTQDDAMLSNLTAGETLYYSAQLQFPDSMSIAEKKERAEMTLREMGLQDAINTKVGGWGAKGLSGGQKRRLSICIEILTRPRLLFLDEPTSGLDSAASYYVMRRIASLNLRDGILRTIVTSIHQPSSEVFELFHDLCLLSSGETVYFGPASDANQFFALNGFPCPTHHNPSDHYLRIINKDFEQDAEEGFGKGATTEEAISILVKSYGSSQIRNKVKMEVVKISESDSGAIGKKGIHAAFLTQCLVLIRRSSLQLFRDISNYWLRLSVFIVIAISIGSIFYHIGSSNESIQGRGSLLTFFISVLSFMNLIGGFSPLLEEMKVFERERLNGHYGITAFLIGNILSVVPYMLMISLIPGGIAYYLCGLHKGLENFMYFTSLLFAIMMWVESLMLVVGSVSPNYVIGMFIAGGIAGLMILTGGFYRLPNDIPKPLWKYPLYYVSFLKYAFQGSFKNEFEGLTFSIEQDGGTKTISGRQVLIESWHVEMGHSKWVDLAIMFAMIVLYRVLFLAITKSKEKLKPSVPKNTAFLALGENFGEKEGITVTWDDLCVTVSNGKKRKTMLQGLTGYALPGRLLAIMGPSGSGKSTFLDALAGRLSSNIKRTGNILINGHKQVLAYGTSGYVTQDAAMLSNLTAGETLYYSAQLQFPDSMSIAEKKERAEMTLREMGLQDAINTKVGGWGDKGLSGGQKRRLSICIEILTRPRLLFLDEPTSGLDSAASYYVMRRIASLNLRDGILRTIVTSIHQPSSEVFELFHDLCLLSSGETVYFGPAPDANQFFSSKGFPCPTHHNPSDHYLTIINKDFEQDATEGFATTEEAIGILVNSYGSSQIGNKVKKEVAKISESDSGAIGKKGIHAAFLTQCLVLIRRSSLQLFRDISNYWLRLSVFIVIAISIGSIFYHIGSSNESIQGRGSLLTFFISVLTFMNLVGGFSPLLEEMKVFERERLNGHYGITVFLIGNILSVVPYMLMISLIPGGIAYYLCGLHKGLENFMYFTSLLFAIMMWVESLMLVVGSVSPNYVIGMFIAGGIAGLMILTGGFYRLPNDIPKPLWKYPLYYVSFLKYAFQGSFKNEFEGLTFSIEQDGGTKTISGRQVLIEAWHVEMGHSKWVDLAIMFAMIVLYRVLFLAITKSKEKLKPSVVPKHKFSLELPERVIII 1280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1419g00001 1280 Pfam ABC-2 type transporter 984 1197 IPR013525 GO:0016020|GO:0140359
Gabi1419g00001 1280 Pfam ABC-2 type transporter 366 579 IPR013525 GO:0016020|GO:0140359
Gabi1419g00001 1280 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 38 647 - -
Gabi1419g00001 1280 FunFam ABC transporter G family member 11 43 330 - -
Gabi1419g00001 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 288 IPR027417 -
Gabi1419g00001 1280 FunFam ABC transporter G family member 11 664 948 - -
Gabi1419g00001 1280 SMART AAA_5 73 266 IPR003593 GO:0016887
Gabi1419g00001 1280 SMART AAA_5 694 887 IPR003593 GO:0016887
Gabi1419g00001 1280 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 45 290 IPR003439 GO:0005524
Gabi1419g00001 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 667 904 IPR027417 -
Gabi1419g00001 1280 ProSitePatterns ABC transporters family signature. 808 822 IPR017871 GO:0005524|GO:0016887
Gabi1419g00001 1280 ProSitePatterns ABC transporters family signature. 187 201 IPR017871 GO:0005524|GO:0016887
Gabi1419g00001 1280 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 666 911 IPR003439 GO:0005524
Gabi1419g00001 1280 CDD ABCG_EPDR 42 272 - -
Gabi1419g00001 1280 Pfam ABC-2 type transporter 868 944 IPR043926 GO:0140359
Gabi1419g00001 1280 Pfam ABC-2 type transporter 247 309 IPR043926 GO:0140359
Gabi1419g00001 1280 Pfam ABC transporter 693 836 IPR003439 GO:0005524
Gabi1419g00001 1280 Gene3D - 44 295 IPR027417 -
Gabi1419g00001 1280 Gene3D - 657 906 IPR027417 -
Gabi1419g00001 1280 Pfam ABC transporter 65 215 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1419g00001 Gabi-Chr1419 8140 34020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1419g00001 695 846 Calmodulin-binding Proteins AT2G36910 32.704 2.42e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1419g00001 K05681 - gmx:100794527 1491.48