Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1416g00005 ATGGAAAAGGATGTGTGTGATCTTTCCCCTACATGGGATGGTGATAATGGAAACTCTGTGGAGAAAAGGCTCAGGTTATTTGGCTTTGAGCTAAACCCTTCTAAGAATAACGAGGGATGTATCAAAGAGTCTGCTGAAGGAGATGAAAGTGTGAACTCCTCTAACTCAGTTTCATCAGGAGGAGAGAAAACTCCTGAGGAGAAGGGCACAGCCAGAGACCCAGAAGAGAGAAAGTTTGAGTGCCAATACTGTTTCAAAGAATTTGCAAACTCACAAGCATTAGGAGGCCACCAAAATGCCCACAAGAAAGAAAGAATGAAGAAGAAAAGATTGCAGCTTCAAGCTAGGAAAGCTAGCATAAACTGCTACCTACAACCTTTTCAAAGCAACCATGGCTTTGCTTACCATGGCTCTAATACTCCTTGGTTCTATGATCCCTCTTCCTATAACTCTGAGTTCACCTTGTGTGAAGAGTCTCAGATTAGCTTCAATTCAAATTATCAAGATACCAACTTTAGTACTGGTGATCAGAAATCTAGTTGGTATTCTTTGCCATCCCACACTCCTCCCCAACAACAAACTTGCATGTTTGCTTTCTCCAATACAGATAATTTTACAGATAATAGGCCTTTCATCTTCAAGTCTCGTCACTTCCCTGCTTCAAACCAGAGCCATAGTAAAGCTTTGGATCTTCAATTAGGCCTCAACATGCAATCAAATACAAGAAGCTCTCAAAGAAGGCCTTAA 747 0.4123 MEKDVCDLSPTWDGDNGNSVEKRLRLFGFELNPSKNNEGCIKESAEGDESVNSSNSVSSGGEKTPEEKGTARDPEERKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQARKASINCYLQPFQSNHGFAYHGSNTPWFYDPSSYNSEFTLCEESQISFNSNYQDTNFSTGDQKSSWYSLPSHTPPQQQTCMFAFSNTDNFTDNRPFIFKSRHFPASNQSHSKALDLQLGLNMQSNTRSSQRRP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1416g00005 248 SUPERFAMILY beta-beta-alpha zinc fingers 75 106 IPR036236 -
Gabi1416g00005 248 Gene3D Classic Zinc Finger 55 129 - -
Gabi1416g00005 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Gabi1416g00005 248 MobiDBLite consensus disorder prediction 47 63 - -
Gabi1416g00005 248 PANTHER ZINC FINGER PROTEIN 5 19 238 IPR044299 GO:0010090
Gabi1416g00005 248 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Gabi1416g00005 248 MobiDBLite consensus disorder prediction 31 74 - -
Gabi1416g00005 248 FunFam zinc finger protein 5 53 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1416g00005 Gabi-Chr1416 184025 184940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1416g00005 11 120 C2H2 Transcription Factor Family AT5G06650 38.053 5.03e-16 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi1416g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1416g00005 - - qsa:O6P43_033118 345.895