Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1416g00003 ATGCCAGGACATCGGTCGAAGTCGGAGAAGCATGACGGAGAGAAGCAGCTCCGGCGGGATCCCTACGAGGTCCTCGGCGTTTCCCGCAACTCAACGGATCAAGAAATCAAAACCGCTTACCGGAAAATGGCCCTCAAATATCATCCTGACAAGAATGCTAATGATCCTAAAGCTGCCGATATGTTTAAAGAGGTTACCTTTTCTTATAATATTTTGTCAGACCCTGACAAAAGGCGTCAGTACGACTCAGCTGGCTTTGAGGCTGTTGAATCAGATAGCCAAGAGTTGGAGTTGGATCTTTCAAGTTTGGGTGCTGTCAATACGATGTTTGCAGCACTTTTTAGTAAACTTGGTGTGCCAATCAAGACAACTGTATCTGCTACTGTTTTGGAAGAGGCACTCAATGGTTTAGTTTCCATTCGTCCACTTCCATTGGGACAGTTTATATCTAAAAAGGTTGAGAAGCAATGTGCACACTTCTATTCAGTTACAATAACAGAAGAGGAAGCACGAGCTGGGTTTGTTTGTCGAGTGCAATCATCAGACAAAAGCAAGTTCAAGTTATTATATTTTGACCGGGAAGACAACGGTGGTTTAAGTCTTGCACTTCAGGAAGACAGTGCCAAAACAGGGAAGGTTACCTCTGCTGGAATGTATTTTCTTGGGTTTCCTGTTTATCGGTTAGATCAGACAATGAACTCTATAGCTGCTGCTAAGGATCCAGATACATCATTTTTCAGAAAGCTGGATGGATTCCAGCCTTGTGAATTGACAGAATTGAAGGCTGGTACCCATGTATTTGCAGTTTATGGTGACAACTTTTTCAAAAGTGCAAACTATACAATAGAAGCTCTGTGTGCTGCACCTTTTAGTGAAGAAAAGGAAAATTTAAGAAATGTAGAAGCTCAAATTTTGTCTAAAAGGGCAGAAATGTCGAAGTTTGAGACAGAATATCGAGAGGTTCTGGCACAATTCACAGAGATGACAAGCAGATATGCACATGAAATGCAAGCAATTGACGAGCTACTGAAACAAAGAAATGAAATACATGCATCATACACTATTGCTCCTTTAAAACGGAGTACAAGTAAGAGCAGGAGTAAAAATTCTTCCAAGGAGGCAAAAGAAGATAGTCAAGCAAGAGAGAAGAGGAATATAAGAGATCGGCCAAAGAAGAAGAAATGGTATAACATCCATTTAAGAGTAGATAAGAGAAAGGCTTGCTGA 1227 0.4116 MPGHRSKSEKHDGEKQLRRDPYEVLGVSRNSTDQEIKTAYRKMALKYHPDKNANDPKAADMFKEVTFSYNILSDPDKRRQYDSAGFEAVESDSQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGLVSIRPLPLGQFISKKVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREDNGGLSLALQEDSAKTGKVTSAGMYFLGFPVYRLDQTMNSIAAAKDPDTSFFRKLDGFQPCELTELKAGTHVFAVYGDNFFKSANYTIEALCAAPFSEEKENLRNVEAQILSKRAEMSKFETEYREVLAQFTEMTSRYAHEMQAIDELLKQRNEIHASYTIAPLKRSTSKSRSKNSSKEAKEDSQAREKRNIRDRPKKKKWYNIHLRVDKRKAC 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1416g00003 408 ProSiteProfiles dnaJ domain profile. 20 85 IPR001623 -
Gabi1416g00003 408 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 5 407 - -
Gabi1416g00003 408 MobiDBLite consensus disorder prediction 1 22 - -
Gabi1416g00003 408 Pfam DnaJ domain 20 82 IPR001623 -
Gabi1416g00003 408 PRINTS DnaJ domain signature 57 77 IPR001623 -
Gabi1416g00003 408 PRINTS DnaJ domain signature 77 96 IPR001623 -
Gabi1416g00003 408 PRINTS DnaJ domain signature 40 55 IPR001623 -
Gabi1416g00003 408 PRINTS DnaJ domain signature 22 40 IPR001623 -
Gabi1416g00003 408 Coils Coil 290 317 - -
Gabi1416g00003 408 ProSitePatterns Nt-dnaJ domain signature. 62 81 IPR018253 -
Gabi1416g00003 408 FunFam Chaperone protein dnaJ 16 4 102 - -
Gabi1416g00003 408 CDD DnaJ 20 74 IPR001623 -
Gabi1416g00003 408 SMART dnaj_3 19 77 IPR001623 -
Gabi1416g00003 408 MobiDBLite consensus disorder prediction 354 395 - -
Gabi1416g00003 408 SUPERFAMILY Chaperone J-domain 19 89 IPR036869 -
Gabi1416g00003 408 MobiDBLite consensus disorder prediction 366 385 - -
Gabi1416g00003 408 MobiDBLite consensus disorder prediction 1 28 - -
Gabi1416g00003 408 Gene3D DnaJ domain 4 103 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1416g00003 Gabi-Chr1416 149460 155036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1416g00003 18 83 C2H2 Transcription Factor Family AT1G74250 42.254 5.17e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1416g00003 - - gmx:100800929 745.732