Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1413g00016 ATGGATTCGAATTCACATGGAAACCTGGATGAGCAGATTTCTCAGCTCATGCAGTGCAAACCCTTGTCCGAGCAAGAGTGTCCAGATACAAATTACTTATTTATGGGAGATTATGTTGACCGTGGCTATTATTCTGTCGAAACCGTAACGCTTTTGGTTGCCCTTAAAGTGCGTTATCGTCAGCGTATCACTATTCTGAGGGGAAATCATGAAAGTCGCCAGATTACTCAAGTTTATGGGTTTTATGATGAGTGCCTACGGAAGTATGGCAGTGCTAATGTTTGGAAGATCTTTACTGATTTGTTTGACTACTTTCCATTGACAGCATTAGTTGAATCTGAAATATTTTGTCTTCATGGTGGGTTGTCCCCATCTATTGAAACCCTTGATAACATACGTAATTTTGATCGTGTACAAGAAGTTCCTCATGAGGGACCCATGTGTGATCTTCTATGGTCTGATCCGGATGATCGTTGTGGTTGGGGTATCTCTCCTAGAGGTGCTGGATATACCTTTGGCCAGGACATATCTGAGCAATTTAACCATACCAACAACTTGAAGCTGATTGCTAGGGCTCACCAGCTTGTTATGGAAGGATATAACTGGGGTCATGATCAAAAGGTGGTTACCATATTTAGTGCACCTAATTATTGTTATCGCTGTGGCAACATGGCATCTATCCTTGAAGTTGATGACTGCAAAGGACACACATTCATTCAGTTTGAGCCAGCTCCAAGGAGGGGAGAGCCAGATGTAACCAGGAGAACACCTGATTACTTCCTATGA 786 0.4249 MDSNSHGNLDEQISQLMQCKPLSEQECPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLIARAHQLVMEGYNWGHDQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1413g00016 261 ProSitePatterns Serine/threonine specific protein phosphatases signature. 66 71 IPR006186 GO:0016787
Gabi1413g00016 261 Pfam Calcineurin-like phosphoesterase 26 194 IPR004843 GO:0016787
Gabi1413g00016 261 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 7 261 IPR047129 GO:0004722
Gabi1413g00016 261 SMART pp2a_7 5 245 IPR006186 GO:0016787
Gabi1413g00016 261 CDD MPP_PP2A_PP4_PP6 8 245 - -
Gabi1413g00016 261 Gene3D - 3 261 IPR029052 -
Gabi1413g00016 261 SUPERFAMILY Metallo-dependent phosphatases 6 246 IPR029052 -
Gabi1413g00016 261 PRINTS Serine/threonine phosphatase family signature 100 126 IPR006186 GO:0016787
Gabi1413g00016 261 PRINTS Serine/threonine phosphatase family signature 129 156 IPR006186 GO:0016787
Gabi1413g00016 261 PRINTS Serine/threonine phosphatase family signature 65 89 IPR006186 GO:0016787
Gabi1413g00016 261 PRINTS Serine/threonine phosphatase family signature 185 205 IPR006186 GO:0016787
Gabi1413g00016 261 PRINTS Serine/threonine phosphatase family signature 207 223 IPR006186 GO:0016787
Gabi1413g00016 261 PRINTS Serine/threonine phosphatase family signature 32 59 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1413g00016 Gabi-Chr1413 166160 174278 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1413g00016 7 191 Calmodulin-binding Proteins AT5G63870 31.674 6.32e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1413g00016 K04382 - gmx:100798408 530.02