Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1413g00015 ATGGATTCGAATTCACATGGAAACCTGGATGAGCAGATTTCTCAGCTCATGCAGTGCAAACCCTTGTCCGAGCAAGAGGTAAGGGTTTTGTGTGATAAGGCGAAGGAGATTTTAATGGAAGAGAGCAATGTCCAGCCTGTGAAAAGTCCTGTTACAATTTGTGGTGATATTCATGGGCAATTTCATGATCTTGCAGAGCTTTTTCGCATTGGAGGAAAGTGTCCAGATACAAATTACTTATTTATGGGAGATTATGTTGACCGTGGCTATTATTCTGTCGAAACCGTAACGCTTTTGGTTGCCCTTAAAGTGCGTTATCGTCAGCGTATCACTATTCTGAGGGGAAATCATGAAAGTCGCCAGATTACTCAAGTTTATGGGTTTTATGATGAGTGCCTACGGAAGTATGGCAGTGCTAATGTTTGGAAGATCTTTACTGATTTGTTTGACTACTTTCCATTGACAGCATTAGTTGAATCTGAAATATTTTGTCTTCATGGTGGGTTGTCCCCATCTATTGAAACCCTTGATAACATACGTAATTTTGATCGTGTACAAGAAGTTCCTCATGAGGGACCCATGTGTGATCTTCTATGGTCTGATCCGGATGATCGTTGTGGTTGGGGTATCTCTCCTAGAGGTGCTGGATATACCTTTGGCCAGGACATATCTGAGCAATTTAACCATACCAACAACTTGAAGCTGATTGCTAGGGCTCACCAGCTTGTTATGGAAGGATATAACTGGGGTCATGATCAAAAGGTGGTTACCATATTTAGTGCACCTAATTATTGTTATCGCTGTGGCAACATGGCATCTATCCTTGAAGTTGATGACTGCAAAGGACACACATTCATTCAGTTTGAGCCAGCTCCAAGGAGGGGAGAGCCAGATGTAACCAGGAGAACACCTGATTACTTCCTATGA 927 0.4229 MDSNSHGNLDEQISQLMQCKPLSEQEVRVLCDKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLIARAHQLVMEGYNWGHDQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1413g00015 308 Gene3D - 1 308 IPR029052 -
Gabi1413g00015 308 PRINTS Serine/threonine phosphatase family signature 147 173 IPR006186 GO:0016787
Gabi1413g00015 308 PRINTS Serine/threonine phosphatase family signature 50 77 IPR006186 GO:0016787
Gabi1413g00015 308 PRINTS Serine/threonine phosphatase family signature 112 136 IPR006186 GO:0016787
Gabi1413g00015 308 PRINTS Serine/threonine phosphatase family signature 232 252 IPR006186 GO:0016787
Gabi1413g00015 308 PRINTS Serine/threonine phosphatase family signature 79 106 IPR006186 GO:0016787
Gabi1413g00015 308 PRINTS Serine/threonine phosphatase family signature 176 203 IPR006186 GO:0016787
Gabi1413g00015 308 PRINTS Serine/threonine phosphatase family signature 254 270 IPR006186 GO:0016787
Gabi1413g00015 308 CDD MPP_PP2A_PP4_PP6 8 292 - -
Gabi1413g00015 308 SUPERFAMILY Metallo-dependent phosphatases 7 293 IPR029052 -
Gabi1413g00015 308 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 7 308 IPR047129 GO:0004722
Gabi1413g00015 308 SMART pp2a_7 22 292 IPR006186 GO:0016787
Gabi1413g00015 308 ProSitePatterns Serine/threonine specific protein phosphatases signature. 113 118 IPR006186 GO:0016787
Gabi1413g00015 308 Pfam Calcineurin-like phosphoesterase 50 241 IPR004843 GO:0016787
Gabi1413g00015 308 FunFam Serine/threonine-protein phosphatase 1 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1413g00015 Gabi-Chr1413 166160 174278 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1413g00015 14 238 Calmodulin-binding Proteins AT5G63870 34.082 8.71e-32 118