Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1413g00013 ATGCGAAGTTCATGGGCAGATTTGGCTGCAAATTCTGCAGCTGACATTGCAGTTCCTGGTTCTTCTGCCAACAACCCGGGAACTGGCAGCACTTTAGCTCCTTCGAAACCTGTTTATGTTCCTCCCCATCTGAGGAACCGTCCACCGTCAGCAGAATCTCCTGCTCCAACAAATAGTGGCCCAACTTCTGGTTCTGGTTCTGGTACTGTTGCTGGTAATGCTGGATCACGTTGGGCTGCACCGAAAAATGATTATCGTTCTGGGTATGGTGGCGGTGGCCATACGAGTGGATGGGGGAACAAAAGTGGTGGTTGGGATCATGGCAGGGAGCGGGAAGTCAATCCCTTTGGAGATGAGGATAATGTAGAACAGGCAGTTAGTGAGCCGGAGAATACAGGAATAAATTTTGATGCATATGAAGACATTCCAGTGGAGACCAGTGGTCAAAATGTGCCCCAACCTGTGAATACATTTGCTGAGATTGACTTGGGTGAAGCACTTAATCAGAATATAAGAAGGTGCAAATATGTGAAGCCAACACCTGTTCAGCGGCATGCCATACCAATATCCCTTGCTGGACGGGATTTGATGGCTTGTGCGCAGACTGGTTCTGGAAAGACTGCTGCTTTCTGCTTTCCAATTATCAGTGGAATTATGAGGGGCCAACCTGTCCAGAGGCCACCTCGTGGGGTGCGTACAGTGTATCCGCTTGCACTTGTTCTCTCACCAACTAGGGAGTTATCAATGCAAATACATGAAGAGGCTAAGAAGTTTTCGTACCAAACTGGGGTTAGGGTGGTTGTTGCTTATGGTGGAGCACCAATAAACCAGCAGCTGCGGGATCTTGAAAGAGGGGTTGACATTCTTGTTGCAACTCCTGGGAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCATTGCAGATGATCCGATATCTCGCTTTAGATGAAGCAGATCGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCACCAGGTGCCAGACAGACTATGTTGTTCAGTGCCACATTTCCAAAAGAGATACAGAGATTGGCCTCTGATTTCCTTTCAAATTATATTTTCCTTGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTAATTAATCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGGAGTCACCTCATGGACCTTCTTCATGCACAGAGGGAAAATGGTGTACAAGCGAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCGTTGGAACACTGGTTGTGTCTTAATGGTTTTCCTGCAACTACTATTCATGGTGACAGGTCACAACAGGAAAGAGAATTGGCATTAAGGTCATTTAAAAGTGGCAACACCCCCATATTAGTTGCCACTGATGTGGCTGCTCGTGGTCTTGATATTCCCCATGTTGCCCATGTTGTCAACTTTGACCTGCCAAATGATATCGATGATTATGTACACCGTATTGGAAGGACAGGGCGAGCAGGAAAGAAAGGTCTTGCTACTGCATTCTTTAATGACAACAATTCATCCCTAGCTAGGCCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCATGGCTCTCACGGTATGCTGCTCGATCCACTTTTGGTGGAGGGAGAAACCGTCGATCAGGAAATGGCCGGTTTGGTAGCCGTGACTTCCGAAGAGAGGGCTCTTTTAGTAAAGGTGTTTCAGATTACTACGCTGCAGGAAACAGCAGTGGTGGCTACGCTGCAGGAAACAGCAGTGGTGGCTATGGGGCTTCTGGGGGGTATGCTGGAGGGTATGGTCCTGGGGTCACTAGTGCATGGGACTGA 1875 0.4715 MRSSWADLAANSAADIAVPGSSANNPGTGSTLAPSKPVYVPPHLRNRPPSAESPAPTNSGPTSGSGSGTVAGNAGSRWAAPKNDYRSGYGGGGHTSGWGNKSGGWDHGREREVNPFGDEDNVEQAVSEPENTGINFDAYEDIPVETSGQNVPQPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEAKKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLINQRVEYVQESDKRSHLMDLLHAQRENGVQAKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLARPLADLMQEANQEVPAWLSRYAARSTFGGGRNRRSGNGRFGSRDFRREGSFSKGVSDYYAAGNSSGGYAAGNSSGGYGASGGYAGGYGPGVTSAWD 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1413g00013 624 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 156 184 IPR014014 GO:0003724
Gabi1413g00013 624 SMART helicmild6 430 511 IPR001650 -
Gabi1413g00013 624 FunFam Probable ATP-dependent RNA helicase DDX4 119 374 - -
Gabi1413g00013 624 MobiDBLite consensus disorder prediction 15 111 - -
Gabi1413g00013 624 Gene3D - 375 554 IPR027417 -
Gabi1413g00013 624 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 383 550 IPR001650 -
Gabi1413g00013 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 525 IPR027417 -
Gabi1413g00013 624 Pfam DEAD/DEAH box helicase 180 361 IPR011545 GO:0003676|GO:0005524
Gabi1413g00013 624 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 124 550 - -
Gabi1413g00013 624 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 372 IPR014001 -
Gabi1413g00013 624 FunFam ATP-dependent RNA helicase RhlB 375 554 - -
Gabi1413g00013 624 CDD DEADc_DDX3_DDX4 157 378 IPR044763 GO:0003724|GO:0005524
Gabi1413g00013 624 Pfam Helicase conserved C-terminal domain 396 511 IPR001650 -
Gabi1413g00013 624 CDD SF2_C_DEAD 384 520 - -
Gabi1413g00013 624 MobiDBLite consensus disorder prediction 51 72 - -
Gabi1413g00013 624 SMART ultradead3 175 387 IPR014001 -
Gabi1413g00013 624 MobiDBLite consensus disorder prediction 17 32 - -
Gabi1413g00013 624 Gene3D - 113 374 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1413g00013 Gabi-Chr1413 132346 142560 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1413g00013 153 543 Eukaryotic Initiation Factors Gene Family AT3G19760 32.143 1.82e-63 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1413g00013 K11594 - gmx:100795756 1015.37