Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1413g00001 ATGGCGGGGGTTTCTCTCAAGTGCGGTGACTGTGGTGCTCTGTTGAGGTCGGTTGAAGAAGCTCAAGAACACGCTGAGCTCACCTCACACTCCAACTTCTCCGAATCCACTGAACCCGTTCTCAACCTCGTTTGCACCGTTTGCGCCAAACCTTGCCGATCCAAAACCGAGAGTGATTTGCACACGAAAAGAACCGGGCACACTGAATTTGTTGATAAGACTTCGGAGGCAGCAAAGCCAATAAGTTTAGAGGTTCCAAAGGTTGATGATGCTACTTCAGAAGAGCCTCTCGGTGCAACCACTGACCAAAATGAAGAAATGGTTGTTCCAGAAGTTGACAAAAAGCTACTCGAGGAACTTGAATCAATGGGTTTTTCAACAGCACGAGCGACGCGGGCACTTCATTTTTCTGGTAATGCTGGCCTTGAGGCTGCTGTAAATTGGATAGTAGAGCATGAGAATGACCCTGATATAGATCAGATGCCCATGGTACCCGCCAACACCAAAGTCGAGGCTCCTAAACCTTCTCTTACCCCAGAAGAACTGAAGGCCAAACAACAGGAACTAAGGGAGAAGGCTCGCAAGAAGAAAGAAGAGGAAGAGAAGAGAATGGAGAGAGAAAGAGAAAAGGAGAGAATTCGCATTGGCAAGGAGTTGCTGGAAGCAAAGAGAATTGAAGAAGATAATGAGCGAAAACGGTTGTTGGCTCTGAGAAAAGCAGAGAAAGAGGAAGAGAAAAGGGCTAGAGAGAAAATCAAGCAAAAGTTGGAAGAAGACAAGGCAGAAAGAAGGCGAAAACTTGGATTGCCTCCAGAGGAGCCTTCAGTAGCCAAACCTTCAACTGTTGTAGAGGAGAAAAAGAGTTTTCTGCCAGTTAGGCCTGCAACAAAAGCTGAGCAAATGAGAGAGTGCTTGCGTTCTCTCAAGCAGAACCACAAGGAGGATGATGCCAAAGTAAAGAGAGCATTCCAAACTCTTCTAACTTATGTGGGAAATGTTGTCAGAAATCCTGAGGAGGAGAAATTCAGGAAGATTCGGCTTACTAACCAATCTTTTCAGGAAAGAGTTGGTGCTTTGAATGGGGGCATTGAATTCCTGGAAATTTGCGGGTTTGAGAAGATCGATGGTGGTGAGTTTTTGTTTTTGCCAAGGGATAAGGTTGAGATTGCAGTCCTGAATTCAGCTGGATCTGAACTAGACTCTGCAATAAAGAATCCCTTTTTTGGAGTTCTTTAG 1236 0.4547 MAGVSLKCGDCGALLRSVEEAQEHAELTSHSNFSESTEPVLNLVCTVCAKPCRSKTESDLHTKRTGHTEFVDKTSEAAKPISLEVPKVDDATSEEPLGATTDQNEEMVVPEVDKKLLEELESMGFSTARATRALHFSGNAGLEAAVNWIVEHENDPDIDQMPMVPANTKVEAPKPSLTPEELKAKQQELREKARKKKEEEEKRMEREREKERIRIGKELLEAKRIEEDNERKRLLALRKAEKEEEKRAREKIKQKLEEDKAERRRKLGLPPEEPSVAKPSTVVEEKKSFLPVRPATKAEQMRECLRSLKQNHKEDDAKVKRAFQTLLTYVGNVVRNPEEEKFRKIRLTNQSFQERVGALNGGIEFLEICGFEKIDGGEFLFLPRDKVEIAVLNSAGSELDSAIKNPFFGVL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1413g00001 411 SUPERFAMILY PUG domain-like 293 407 IPR036339 -
Gabi1413g00001 411 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Gabi1413g00001 411 MobiDBLite consensus disorder prediction 252 282 - -
Gabi1413g00001 411 Pfam PUB domain 318 388 IPR018997 -
Gabi1413g00001 411 Coils Coil 179 214 - -
Gabi1413g00001 411 CDD PUB_UBA_plant 305 411 - -
Gabi1413g00001 411 SMART uba_6 113 151 IPR015940 -
Gabi1413g00001 411 MobiDBLite consensus disorder prediction 169 210 - -
Gabi1413g00001 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 111 152 IPR015940 -
Gabi1413g00001 411 Gene3D - 113 159 - -
Gabi1413g00001 411 CDD UBA_PUB_plant 111 159 - -
Gabi1413g00001 411 Pfam UBA/TS-N domain 117 149 IPR015940 -
Gabi1413g00001 411 SUPERFAMILY UBA-like 98 165 IPR009060 GO:0005515
Gabi1413g00001 411 PANTHER F13M7.16 PROTEIN 1 411 - -
Gabi1413g00001 411 MobiDBLite consensus disorder prediction 252 271 - -
Gabi1413g00001 411 SMART PGNneu 321 384 - -
Gabi1413g00001 411 Coils Coil 225 262 - -
Gabi1413g00001 411 Gene3D - 299 401 - -
Gabi1413g00001 411 MobiDBLite consensus disorder prediction 176 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1413g00001 Gabi-Chr1413 16804 25367 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1413g00001 88 411 C2H2 Transcription Factor Family AT1G04850 77.676 2.44e-151 429