Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1411g00020 ATGCTGGGTGCATTGCCCATATTGCCTCTTCCTGCTCCTCCCTCTGATGGAAACCTGGGTCCTCTCCCTCTATCGCAAGTGACTGAGGAGAAGAATGATGAGAAACCGTCTAGGGAGGAGCAGATCAAAGCATCGGTTGCTACCCACACTAGAACCATTGGAATTATACATCCACCTCCGGACATTAGAACCATTGTTGATAAAACTTCCCAATTCGTTGCCAAAAATGGGCCAGAGTTTGAGAAAAGGATTATTGCAAATAATACTGGCAATGCCAAGTTCAATTTTTTGAATCCCTCGGATCCATATCATGCATATTATCAGCACCGGCTGGCTGAATTTCGTGCCCAGAACCAATCTTCTGCACAGGAACCTCCTTTGCAGCCTGCAGATTTATCTGTTTCGGAATCAGCTCCGTTGACTGAGAGCAGTGATGCAGTGGCAGCAAAGCCTGATCCCTCTGCCCAATTTAAGCCTGTGAGGAAAGCACTTGAACCACCCGAAGCGGAACAGTATACAGTTCGGCTTCCTGAAGGGATTACGGGGGAAGAACTGGATATTATAAAGCTCACAGCACAATTTGTGGCTCGAAATGGAAAATCATTTTTGACTGGATTGACAAGTAGGGAGGTTAATAATCCCCAATTCCATTTCTTGAAGCCAACGCACAGCATGTTCACATTTTTTACTTCCCTTGCGGATGCATATTCCAGGGTTTTGATGCCTCCTAAGGGGTTGACAGGGAAGCTGAAGAAGAGTGTCTCTGACATGACCACTGTCCTTGAACGATGTGTGAATAGGCTAGAATGGGAGCATTCACAAGAGCAAGCTAGGCAAAAGGCTGAGGATGAGGTTGAACAGGAAAGGGTACAAATGGCAATGATAGACTGGCATGATTTTGTAGTGGTTGAGACAGTAGATTTTGCTGATGATGAGGATGAAGAGCTACCTCCTCCAATGACCCTAGAGGAGGTTGTAAGGAGAAGCAAGGTGTCAACCATGGAAGAAGAGATTATTGAGCCTGAAAAGGAGATAGAAATGGAAATGGATGAGGAAGAGGTTCAACTTGTTGAAGAGGGCATGAGAGCAGCTAGTTTGGAAGACAATGGTGATGGGAAGAAGAATGAAGTCAAGGTTACAGATGAACCTGATCCACCAATGAGGATTGTGAAGAACTGGAAGAGACCGGAGGAGAGGATTCCTACTGAAAGAGATTCAACAAAGTTTGTTGTTTCCCCTATCACTGGTGAGCTGATACCTATTAATGAAATGTCTGAACATATACGAATTTCTCTCATTGATCCTAAGTACAAAGAACAAAAAGAAAGGATGTTTGCCAAAATTCGAGAGACAACCCTTGCTCAGGATGATGAAATATCAAGAAACATTGTTGGACTTGCACGGACTCGTCCTGATATCTTTGGTACTACTGAGGAAGAGGTCTCCAATGCTGTTAAGGCAGAGATTGAGAAGAAGAAAGATGAGCAACCAAAGCAGGTTATATGGGATGGTCACACTGGGAGTATTGGACGCACTGCAAACCAAGCTATTTCACAGAATATTAGTGGTGAGGAGCAAAGTAATGCTGCTAATAGTGAAGCTATGAACCTTCCTGGACCAGCCGCACCTCCTCCTAGACCTGGTATTCCTTCAGTTCGTCCTCTTCCACCGCCACCTGGACTAGCATTGAATCTTCCTCGAGTTCCTCCCAACACAATACAATATTCTTCACCTATCAGTGGTGGCCTTCCAGTTCCTCCGCCCAGACCTCCAGTCATTCCCATGATTCCATCAATGCGGCCAATGCCACCTCAAATGCAGATGACTTCTGGACAGCAGTCAGTTATGGCTGGTCAACCACCCCCAATGCCTCCATCAATTTCTGTGAATGGACCAGGAATTCCCATACCCCCACCACCAGGGTCTCAGTTTACACCTGTTCCAATTCCTCGACCTTTTGCCCCTCACCATGTTCCTCCACCAGCAATGCCTATGATGCCTGCACCACCTTTGCCTCATGGTCTACCACCACCACCACCACCTGAGGAAGCTCCTCCCCCTCTTCCAGATGAACCAGAACCAAAGAGGCAAAAGCTTGATGATTCCCCTCTTATCCCTGAAGATCAGTTTCTGGCTCAACATCCGGGATCTGTTCGAATCAGTGTATCTGTTCCTAATGTTGATGAAGGAAATCTTAAAGGACAAGTTCTGGAAATAACAGTGCAGTCTTTGTCAGAAACTGTTAGCAGTCTGAAGGAGAAAATTGCAGGGGAGATCCAGCTTCCAGCTAACAAACAGAAATTGAGTGCAAAACCTGGTTTTCTAAAGGATAACATGACTCTTGCTTATTACAATATTGGAGGAGGAGAAACACTTACCCTGACCTTGAGAGAGCGTGGTGGTAGAAAGAGATAA 2415 0.4567 MLGALPILPLPAPPSDGNLGPLPLSQVTEEKNDEKPSREEQIKASVATHTRTIGIIHPPPDIRTIVDKTSQFVAKNGPEFEKRIIANNTGNAKFNFLNPSDPYHAYYQHRLAEFRAQNQSSAQEPPLQPADLSVSESAPLTESSDAVAAKPDPSAQFKPVRKALEPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREVNNPQFHFLKPTHSMFTFFTSLADAYSRVLMPPKGLTGKLKKSVSDMTTVLERCVNRLEWEHSQEQARQKAEDEVEQERVQMAMIDWHDFVVVETVDFADDEDEELPPPMTLEEVVRRSKVSTMEEEIIEPEKEIEMEMDEEEVQLVEEGMRAASLEDNGDGKKNEVKVTDEPDPPMRIVKNWKRPEERIPTERDSTKFVVSPITGELIPINEMSEHIRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHTGSIGRTANQAISQNISGEEQSNAANSEAMNLPGPAAPPPRPGIPSVRPLPPPPGLALNLPRVPPNTIQYSSPISGGLPVPPPRPPVIPMIPSMRPMPPQMQMTSGQQSVMAGQPPPMPPSISVNGPGIPIPPPPGSQFTPVPIPRPFAPHHVPPPAMPMMPAPPLPHGLPPPPPPEEAPPPLPDEPEPKRQKLDDSPLIPEDQFLAQHPGSVRISVSVPNVDEGNLKGQVLEITVQSLSETVSSLKEKIAGEIQLPANKQKLSAKPGFLKDNMTLAYYNIGGGETLTLTLRERGGRKR 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1411g00020 804 Gene3D Surp module 180 238 IPR035967 GO:0003723|GO:0006396
Gabi1411g00020 804 MobiDBLite consensus disorder prediction 660 701 - -
Gabi1411g00020 804 Coils Coil 271 291 - -
Gabi1411g00020 804 Pfam Pre-mRNA splicing factor PRP21 like protein 254 468 IPR022030 -
Gabi1411g00020 804 MobiDBLite consensus disorder prediction 660 687 - -
Gabi1411g00020 804 SMART surpneu2 63 116 IPR000061 GO:0003723|GO:0006396
Gabi1411g00020 804 SMART surpneu2 185 238 IPR000061 GO:0003723|GO:0006396
Gabi1411g00020 804 Pfam Ubiquitin family 732 799 IPR000626 GO:0005515
Gabi1411g00020 804 MobiDBLite consensus disorder prediction 538 565 - -
Gabi1411g00020 804 MobiDBLite consensus disorder prediction 117 142 - -
Gabi1411g00020 804 FunFam Probable splicing factor 3A subunit 1 693 803 - -
Gabi1411g00020 804 ProSiteProfiles Ubiquitin domain profile. 745 801 IPR000626 GO:0005515
Gabi1411g00020 804 FunFam Splicing factor 3a, subunit 1 180 238 - -
Gabi1411g00020 804 PRINTS Proline rich extensin signature 660 685 - -
Gabi1411g00020 804 PRINTS Proline rich extensin signature 542 558 - -
Gabi1411g00020 804 PRINTS Proline rich extensin signature 583 604 - -
Gabi1411g00020 804 PRINTS Proline rich extensin signature 638 655 - -
Gabi1411g00020 804 Gene3D - 693 803 - -
Gabi1411g00020 804 SUPERFAMILY Ubiquitin-like 697 802 IPR029071 -
Gabi1411g00020 804 MobiDBLite consensus disorder prediction 1 41 - -
Gabi1411g00020 804 CDD Ubl_SF3a120 718 797 IPR035563 -
Gabi1411g00020 804 Gene3D Surp module 49 122 IPR035967 GO:0003723|GO:0006396
Gabi1411g00020 804 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 41 753 IPR045146 GO:0003723|GO:0045292
Gabi1411g00020 804 SUPERFAMILY Surp module (SWAP domain) 164 237 IPR035967 GO:0003723|GO:0006396
Gabi1411g00020 804 SMART ubq_7 725 797 IPR000626 GO:0005515
Gabi1411g00020 804 SUPERFAMILY Surp module (SWAP domain) 38 115 IPR035967 GO:0003723|GO:0006396
Gabi1411g00020 804 Pfam Surp module 185 236 IPR000061 GO:0003723|GO:0006396
Gabi1411g00020 804 Pfam Surp module 63 114 IPR000061 GO:0003723|GO:0006396
Gabi1411g00020 804 MobiDBLite consensus disorder prediction 521 567 - -
Gabi1411g00020 804 MobiDBLite consensus disorder prediction 117 164 - -
Gabi1411g00020 804 FunFam Splicing factor 3A subunit 1 49 120 - -
Gabi1411g00020 804 MobiDBLite consensus disorder prediction 366 387 - -
Gabi1411g00020 804 ProSiteProfiles SURP motif repeat profile. 187 229 IPR000061 GO:0003723|GO:0006396
Gabi1411g00020 804 ProSiteProfiles SURP motif repeat profile. 65 107 IPR000061 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1411g00020 Gabi-Chr1411 169133 172586 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1411g00020 732 801 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.000 1.56e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1411g00020 K12825 - jre:109007082 1142.49