Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1411g00016 ATGGAGCGTGGAAGCAACTTCTTTCTCTATGATCATCAGGCAAAATCAAGCTCTGATTCAAACCCTTTGCAGGAAGGGAACACTTCCACAAACAGTGAAGTTGCAAGTAACACAAACAACGATGGTGCTAGAATCGAGGAGCGACCAGCTGCACCTCGCAATTTGGTTATGCAGGAAGAGGAGCAGAGTATGCCCATTGCAAGTTTGATGAGAATCATGCGGCGGATTCTTCCGCCGCATGCAAAAGTCTCCGAAGAGGCCAAGTTAGCAATTCAAGGGTGCGTGTCTGAGTTCATAAGCTTCATCACCGGCGAGGCCAACGAGCGATGCCAGCTCGAGCATAGGAAAATCGTTACAGCAGAAGATGTACTGTGGGCAATGGAGAGGCTAGGATTTGAAGAATATCTCGAACCTCTTCGTTTTTATCTCCTACGTTATCGCCATAATGAGGTTGAATGCTTGGGACATCATGGAGGACATGTTCCTATGCGGCGAATCAATGCAAATTATAGAATGCCTCCACCTCCACCTCCACCACCACCTACACTAGCTTCTTATGGGTCTAATTTCACTGCCACTTCAAGTGGGTTATACAAAGATGGGTCGGGTGCTAGTGGCTCGGGCAGTGACCAACTTTGA 639 0.4789 MERGSNFFLYDHQAKSSSDSNPLQEGNTSTNSEVASNTNNDGARIEERPAAPRNLVMQEEEQSMPIASLMRIMRRILPPHAKVSEEAKLAIQGCVSEFISFITGEANERCQLEHRKIVTAEDVLWAMERLGFEEYLEPLRFYLLRYRHNEVECLGHHGGHVPMRRINANYRMPPPPPPPPPTLASYGSNFTATSSGLYKDGSGASGSGSDQL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1411g00016 212 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 34 152 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gabi1411g00016 212 MobiDBLite consensus disorder prediction 10 43 - -
Gabi1411g00016 212 PRINTS CCAAT-binding transcription factor subunit A signature 129 147 - -
Gabi1411g00016 212 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Gabi1411g00016 212 PRINTS CCAAT-binding transcription factor subunit A signature 110 128 - -
Gabi1411g00016 212 MobiDBLite consensus disorder prediction 167 189 - -
Gabi1411g00016 212 SUPERFAMILY Histone-fold 60 150 IPR009072 GO:0046982
Gabi1411g00016 212 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 63 127 IPR003958 -
Gabi1411g00016 212 ProSitePatterns NF-YB/HAP3 subunit signature. 94 110 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gabi1411g00016 212 Gene3D Histone, subunit A 53 155 IPR009072 GO:0046982
Gabi1411g00016 212 MobiDBLite consensus disorder prediction 169 184 - -
Gabi1411g00016 212 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1411g00016 Gabi-Chr1411 146279 149012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1411g00016 1 152 CCAAT-HAP3 Transcription Factor Family AT1G21970 47.771 2.15e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi1411g00016 CBFD_NFYB_HMF 1.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1411g00016 K08065 - cave:132173704 161.384