Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1411g00013 ATGGGAGGAGGTGCTTTTACTGAATTGGGACCCTTTTATCCTAAAGGTGATGGACGTGGTCTCCGAATAAATTCAAAGTCTTGGAATAAAGCTTCCAACATTCTTTTCGTGGAGTCTCCTGCTGGAGTTGGTTGGTCATACTCAAATACAACTTCTGATTATAACTCTGGAGACGCATCCACTGCCAACGATATGTATTTGTTCATGCTGAAATGGTACGAGAAGTTTCCATCATACAGATCAAGGGAGCTGTTCCTTACCGGTGAAAGCTATGCAGGACACTACATACCACAGTTAACTAATGCTCTACTGGACCATAATGCTCATTCAACTGGTTTCAAATTCAACATCAAAGGAGTTGCTATTGGAAACCCACTTCTGAGACTTGATCGGGATGCACCAGCAACATATGAATACTTCTGGTCACATGGAATGATTTCTGATGAAATTGGCCTTGCCATTATGAACAATTGTGATTTTGATGATTATGCCTATGCAAGTCCTCACAATGTTTCTCATTCATGCAACGATGCCATGTATGAAGCAAATCTCGTTGTTGGCAATTATATAAACAACTATGATGTAATTTTGGATGTTTGTTATCCATCCATAGTGGAACAAGAACTTAGATTGAAAAAGATGGCTACAAAAATAAGTGTAGGCGTAGATGTCTGTATGAGTTATGAAAGACGTTTTTACTTCAACCTCCCTGAGGTTCAGAAGGCGCTCCATGCAAACCGTACCAATCTTCCTTATAGCTGGTCCATGTGTAGTCCTGTTCTAAACTATAGCGACACTGATGGTAACATCGATATCCTTCCAATTCTCAAAAGGATAGTCCAGAACCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTGTTCCATTATTGGGATCTCGATCACTTATTCGTGAACTAGCTCATGAATTGAAGTTCAAGATTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACCGAGTATGGAAATTTGTTAACTTTTGCCACAGTAAGAGGAGCTGCTCACATGGTACCTTATGCACAACCTTCAAGAGCATTGCATCTATTCAGTTCATTTGTGCGTGGCAGGAGGTTGCCAAATACAACTCGTCCTTCAATTGATGAATAA 1155 0.4078 MGGGAFTELGPFYPKGDGRGLRINSKSWNKASNILFVESPAGVGWSYSNTTSDYNSGDASTANDMYLFMLKWYEKFPSYRSRELFLTGESYAGHYIPQLTNALLDHNAHSTGFKFNIKGVAIGNPLLRLDRDAPATYEYFWSHGMISDEIGLAIMNNCDFDDYAYASPHNVSHSCNDAMYEANLVVGNYINNYDVILDVCYPSIVEQELRLKKMATKISVGVDVCMSYERRFYFNLPEVQKALHANRTNLPYSWSMCSPVLNYSDTDGNIDILPILKRIVQNHIPVWVFSGDQDSVVPLLGSRSLIRELAHELKFKITVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALHLFSSFVRGRRLPNTTRPSIDE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1411g00013 384 ProSitePatterns Serine carboxypeptidases, serine active site. 86 93 IPR018202 GO:0004185
Gabi1411g00013 384 Gene3D - 225 261 - -
Gabi1411g00013 384 Pfam Serine carboxypeptidase 3 371 IPR001563 GO:0004185|GO:0006508
Gabi1411g00013 384 Gene3D alpha/beta hydrolase 1 210 IPR029058 -
Gabi1411g00013 384 Gene3D - 272 371 - -
Gabi1411g00013 384 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 2 358 IPR001563 GO:0004185|GO:0006508
Gabi1411g00013 384 FunFam Carboxypeptidase 272 371 - -
Gabi1411g00013 384 PRINTS Carboxypeptidase C serine protease (S10) family signature 72 97 IPR001563 GO:0004185|GO:0006508
Gabi1411g00013 384 PRINTS Carboxypeptidase C serine protease (S10) family signature 24 36 IPR001563 GO:0004185|GO:0006508
Gabi1411g00013 384 PRINTS Carboxypeptidase C serine protease (S10) family signature 37 47 IPR001563 GO:0004185|GO:0006508
Gabi1411g00013 384 PRINTS Carboxypeptidase C serine protease (S10) family signature 341 354 IPR001563 GO:0004185|GO:0006508
Gabi1411g00013 384 SUPERFAMILY alpha/beta-Hydrolases 4 374 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1411g00013 Gabi-Chr1411 110860 115530 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1411g00013 231 374 Calmodulin-binding Proteins AT2G22960 25.850 2.40e-11 60.5