Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1411g00012 ATGGGTAGGTGTTGGTTGGTTGGGGTCTTAATTGTGTTGGGGTGTGCCAGCTTGCTGGGTACTGTTGGAGTAGAAGGGTATCCATCTGAGGATCTTGTTGTGAGATTGCCTGGTCAACCCAATGTTGGGTTTGTGCAGTATGCTGGGTATGTTGATGTAGATGTCAAGCATGGTAGGAGCCTGTTCTACTATTTTGTTGAGGCTGAACAAGACCCTCACAACAAGCCCCTCACACTTTGGCTCAATGGAGGTCCGGGATGTTCCTCCATGGGAGGAGGTGCTTTTACTGAATTGGGACCCTTTTATCCTAAAGGTGATGGACGTGGTCTCCGAATAAATTCAAAGTCTTGGAATAAAGCTTCCAACATTCTTTTCGTGGAGTCTCCTGCTGGAGTTGGTTGGTCATACTCAAATACAACTTCTGATTATAACTCTGGAGACGCATCCACTGCCAACGATATGTATTTGTTCATGCTGAAATGGTACGAGAAGTTTCCATCATACAGATCAAGGGAGCTGTTCCTTACCGGTGAAAGCTATGCAGGACACTACATACCACAGTTAACTAATGCTCTACTGGACCATAATGCTCATTCAACTGGTTTCAAATTCAACATCAAAGGAGTTGCTATTGGAAACCCACTTCTGAGACTTGATCGGGATGCACCAGCAACATATGAATACTTCTGGTCACATGGAATGATTTCTGATGAAATTGGCCTTGCCATTATGAACAATTGTGATTTTGATGATTATGCCTATGCAAGTCCTCACAATGTTTCTCATTCATGCAACGATGCCATGTATGAAGCAAATCTCGTTGTTGGCAATTATATAAACAACTATGATGTAATTTTGGATGTTTGTTATCCATCCATAGTGGAACAAGAACTTAGATTGAAAAAGATGGCTACAAAAATAAGTGTAGGCGTAGATGTCTGTATGAGTTATGAAAGACGTTTTTACTTCAACCTCCCTGAGGTTCAGAAGGCGCTCCATGCAAACCGTACCAATCTTCCTTATAGCTGGTCCATGTGTAGTCCTGTTCTAAACTATAGCGACACTGATGGTAACATCGATATCCTTCCAATTCTCAAAAGGATAGTCCAGAACCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTGTTCCATTATTGGGATCTCGATCACTTATTCGTGAACTAGCTCATGAATTGAAGTTCAAGATTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACCGAGTATGGAAATTTGTTAACTTTTGCCACAGTAAGAGGAGCTGCTCACATGGTACCTTATGCACAACCTTCAAGAGCATTGCATCTATTCAGTTCATTTGTGCGTGGCAGGAGGTTGCCAAATACAACTCGTCCTTCAATTGATGAATAA 1422 0.4241 MGRCWLVGVLIVLGCASLLGTVGVEGYPSEDLVVRLPGQPNVGFVQYAGYVDVDVKHGRSLFYYFVEAEQDPHNKPLTLWLNGGPGCSSMGGGAFTELGPFYPKGDGRGLRINSKSWNKASNILFVESPAGVGWSYSNTTSDYNSGDASTANDMYLFMLKWYEKFPSYRSRELFLTGESYAGHYIPQLTNALLDHNAHSTGFKFNIKGVAIGNPLLRLDRDAPATYEYFWSHGMISDEIGLAIMNNCDFDDYAYASPHNVSHSCNDAMYEANLVVGNYINNYDVILDVCYPSIVEQELRLKKMATKISVGVDVCMSYERRFYFNLPEVQKALHANRTNLPYSWSMCSPVLNYSDTDGNIDILPILKRIVQNHIPVWVFSGDQDSVVPLLGSRSLIRELAHELKFKITVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALHLFSSFVRGRRLPNTTRPSIDE 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1411g00012 473 SUPERFAMILY alpha/beta-Hydrolases 24 467 IPR029058 -
Gabi1411g00012 473 Gene3D - 314 350 - -
Gabi1411g00012 473 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Gabi1411g00012 473 FunFam Carboxypeptidase 361 460 - -
Gabi1411g00012 473 Pfam Serine carboxypeptidase 38 460 IPR001563 GO:0004185|GO:0006508
Gabi1411g00012 473 FunFam Carboxypeptidase 27 291 - -
Gabi1411g00012 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Gabi1411g00012 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185|GO:0006508
Gabi1411g00012 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Gabi1411g00012 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Gabi1411g00012 473 Gene3D - 361 460 - -
Gabi1411g00012 473 Gene3D alpha/beta hydrolase 28 290 IPR029058 -
Gabi1411g00012 473 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 447 IPR001563 GO:0004185|GO:0006508
Gabi1411g00012 473 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1411g00012 Gabi-Chr1411 110860 116020 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1411g00012 320 463 Calmodulin-binding Proteins AT2G22960 25.850 2.25e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1411g00012 K16297 - gmx:100801752 904.049