Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1411g00011 ATGGGTAGGTGTTGGTTGGTTGGGGTCTTAATTGTGTTGGGGTGTGCCAGCTTGCTGGGTACTGTTGGAGTAGAAGGGTATCCATCTGAGGATCTTGTTGTGAGATTGCCTGGTCAACCCAATGTTGGGTTTGTGCAGTATGCTGGGTATGTTGATGTAGATGTCAAGCATGGTAGGAGCCTGTTCTACTATTTTGTTGAGGCTGAACAAGACCCTCACAACAAGCCCCTCACACTTTGGCTCAATGGAGGTCCGGGATGTTCCTCCATGGGAGGAGGTGCTTTTACTGAATTGGGACCCTTTTATCCTAAAGGTGATGGACGTGGTCTCCGAATAAATTCAAAGTCTTGGAATAAAGCTTCCAACATTCTTTTCGTGGAGTCTCCTGCTGGAGTTGGTTGGTCATACTCAAATACAACTTCTGATTATAACTCTGGAGACGCATCCACTGCCAACGATATGTATTTGTTCATGCTGAAATGGTACGAGAAGTTTCCATCATACAGATCAAGGGAGCTGTTCCTTACCGGTGAAAGCTATGCAGGACACTACATACCACAGTTAACTAATGCTCTACTGGACCATAATGCTCATTCAACTGGTTTCAAATTCAACATCAAAGGAGTTGCTATTGGAAACCCACTTCTGAGACTTGATCGGGATGCACCAGCAACATATGAATACTTCTGGTCACATGGAATGATTTCTGATGAAATTGGCCTTGCCATTATGAACAATTGTGATTTTGATGATTATGCCTATGCAAGTCCTCACAATGTTTCTCATTCATGCAACGATGCCATGTATGAAGCAAATCTCGTTGTTGGCAATTATATAAACAACTATGATGTAATTTTGGATGTTTGTTATCCATCCATAGTGGAACAAGAACTTAGATTGAAAAAGATGGTTCAGAAGGCGCTCCATGCAAACCGTACCAATCTTCCTTATAGCTGGTCCATGTGTAGTCCTGTTCTAAACTATAGCGACACTGATGGTAACATCGATATCCTTCCAATTCTCAAAAGGATAGTCCAGAACCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTGTTCCATTATTGGGATCTCGATCACTTATTCGTGAACTAGCTCATGAATTGAAGTTCAAGATTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACCGAGTATGGAAATTTGTTAACTTTTGCCACAGTAAGAGGAGCTGCTCACATGGTACCTTATGCACAACCTTCAAGAGCATTGCATCTATTCAGTTCATTTGTGCGTGGCAGGAGGTTGCCAAATACAACTCGTCCTTCAATTGATGAATAA 1350 0.4259 MGRCWLVGVLIVLGCASLLGTVGVEGYPSEDLVVRLPGQPNVGFVQYAGYVDVDVKHGRSLFYYFVEAEQDPHNKPLTLWLNGGPGCSSMGGGAFTELGPFYPKGDGRGLRINSKSWNKASNILFVESPAGVGWSYSNTTSDYNSGDASTANDMYLFMLKWYEKFPSYRSRELFLTGESYAGHYIPQLTNALLDHNAHSTGFKFNIKGVAIGNPLLRLDRDAPATYEYFWSHGMISDEIGLAIMNNCDFDDYAYASPHNVSHSCNDAMYEANLVVGNYINNYDVILDVCYPSIVEQELRLKKMVQKALHANRTNLPYSWSMCSPVLNYSDTDGNIDILPILKRIVQNHIPVWVFSGDQDSVVPLLGSRSLIRELAHELKFKITVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALHLFSSFVRGRRLPNTTRPSIDE 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1411g00011 449 FunFam Carboxypeptidase 27 291 - -
Gabi1411g00011 449 Pfam Serine carboxypeptidase 38 436 IPR001563 GO:0004185|GO:0006508
Gabi1411g00011 449 Gene3D - 337 436 - -
Gabi1411g00011 449 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Gabi1411g00011 449 Gene3D alpha/beta hydrolase 28 290 IPR029058 -
Gabi1411g00011 449 SUPERFAMILY alpha/beta-Hydrolases 24 443 IPR029058 -
Gabi1411g00011 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Gabi1411g00011 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 406 419 IPR001563 GO:0004185|GO:0006508
Gabi1411g00011 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Gabi1411g00011 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Gabi1411g00011 449 Gene3D - 301 326 - -
Gabi1411g00011 449 FunFam Carboxypeptidase 337 436 - -
Gabi1411g00011 449 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Gabi1411g00011 449 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 423 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1411g00011 Gabi-Chr1411 110860 116020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1411g00011 302 439 Calmodulin-binding Proteins AT2G22960 26.241 1.49e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1411g00011 K16297 - gmx:100801752 848.195