Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1410g00012 ATGTTGAATGTTGATGTAATTGGCAACAAGAAAAGGAAGAGATGTGGGAGGGTTTTCAGGTTCAAGAACTTTGGTGAACCAGGATACCCTGTTATGTTTAGTGGGCCATTTCGTGATAATGTGAATGCATTACTTGAATATGCAAATTTGGAGAGTGATTTAAGCATAGGAATGCCAGTATGGACATTTCAACTTGAAGTTCATCACCACCCACCTTTACATATCTTATTGTTTGTGATTGAAGAGCCAATGGAGGCAGCGCTGAACCGTCATTGCAAGCATTGTCAATACGTTGGCTGGGGTAACCATTTCATTTGCAATAAGAAGTATCACTTCCTGTTACCCTCAAAGGAGGCACTGGCTACCTGCTCAAGCTGTGAAGGCTGCTGTGACACAATTGCTACATTGAATAATGGTAAGTCCAAATTAATAGAATTACAGGGCCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGGCATTTGCTATGTGTCAATGGGTTGGAAACTGGATCGAATTTGGCTGGCAACCACATCATGGAGTTTTGGAATCGTTTGTGCAATGGATTGCAAGCTAGGAAAGTGAGTTTGAATGACATTTCACAGAAAAGAGGCATGGAACTGAGACTAGTCAATGGAATAGCATACAGTGAGCCATGGTTCGGTCGTTGGGGTTACAAATTTGGTCGAGGATGCTTTGGTGTAACACAATCCATGTACCACAAGGCCATAGAGGCAATAAGAAGCATGCCACTATACTTACTCACACACCATATTGGCAATTCAAACCATGACATTCCACTCATCTTCTCAAGGTATCAAACACTTTCAGATCAATCTTTAGTGACCCTTGGTGACTTATTTCGTTACATGTTAGAACTCAAAGCACGCCTTCCCCGTGAAACCTGCATTGGTTCCTATAACACCAATAATGCCTTGGTTGAAACCAATTGTCGTTGGTCACCTAAAAGGATTGAGATGGCAACAAGGGTCATTGTTGAGGCCTTGAAAAGAACAGAGTTCAGATGGATTTCAAGGCAAGAAGTTAGAGATGCTGCTCGTGCATACATTGGTGACACAGGTTTACTTGATTTTGTGCTCAAGTCTCTAGGAAACCACATTGTAGGGAACTACTTGGTACGTAGAAGCTTGAATCCTGTGACTAAAGTATTGGAATATTGCTTAGAAGACATTTCCAATGTGTATCCATGTAATGAAGGCTTGGTCATGAGTAATAAAGTGAAGGACAAGTGCAAGATTACAAGGGCTCAACTCATGAAGGATATGCTTTATTTGTACAAGTATATTCTCGTTGACTCAAAACCAATGATAGGATCAGAGTTTCTCTCAGCTATACCATTGGCTGCTAGGATAATTCTTGACACCAAGTATCTTATCAAAGATTACTTTGGAGATGTTCCTTTCCATGTTGAATTAGGCTCAGAAGGAAAACTCAACCTTTATTGTACAATTTTGTTGAGGAACAATGCAGGACTTGATGAAAATTTAAGCAAGGCTATGCCACCCTATGAATGTATCACATTGAAAAGCAGTGCTACAATCAATGAGCTAAAGGTAGAAGTTGAAAGGAATTTCAGAGAAATCTATTGGGGTTTAAGGAGTTTTGTTGTGGAATCAACTGGGAATTTGAATGCCAATGGGACAGAAATGGTTTTTGGGCTAATTGAAGTGGGTGGAAAGGTTCTTCTTGAGGGTTGGCATGGTGACATGAGAATAAACACGATTGATCAAATATGTGAAAGTGATCCAAACAATGGCATCGTAGACTGCACTTGTGGAACTAAAGAAGATGATGGTGAGAGGATGGTATCTTGTGATATTTGTGAAATTTTGCAGCACACTAGGTGTGTTCGCATTCCTAATGATGAAGAAATTCCTCATATTTTTCTGTGTAAAAGGTGCGAGCAAGAAATTGTTCTGTTCCCTTCTTTACCGTAG 1962 0.4016 MLNVDVIGNKKRKRCGRVFRFKNFGEPGYPVMFSGPFRDNVNALLEYANLESDLSIGMPVWTFQLEVHHHPPLHILLFVIEEPMEAALNRHCKHCQYVGWGNHFICNKKYHFLLPSKEALATCSSCEGCCDTIATLNNGKSKLIELQGHMMHGVFHSNGFGHLLCVNGLETGSNLAGNHIMEFWNRLCNGLQARKVSLNDISQKRGMELRLVNGIAYSEPWFGRWGYKFGRGCFGVTQSMYHKAIEAIRSMPLYLLTHHIGNSNHDIPLIFSRYQTLSDQSLVTLGDLFRYMLELKARLPRETCIGSYNTNNALVETNCRWSPKRIEMATRVIVEALKRTEFRWISRQEVRDAARAYIGDTGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISNVYPCNEGLVMSNKVKDKCKITRAQLMKDMLYLYKYILVDSKPMIGSEFLSAIPLAARIILDTKYLIKDYFGDVPFHVELGSEGKLNLYCTILLRNNAGLDENLSKAMPPYECITLKSSATINELKVEVERNFREIYWGLRSFVVESTGNLNANGTEMVFGLIEVGGKVLLEGWHGDMRINTIDQICESDPNNGIVDCTCGTKEDDGERMVSCDICEILQHTRCVRIPNDEEIPHIFLCKRCEQEIVLFPSLP 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1410g00012 653 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 646 - -
Gabi1410g00012 653 Pfam PHD-finger 598 644 IPR019787 -
Gabi1410g00012 653 SUPERFAMILY FYVE/PHD zinc finger 589 645 IPR011011 -
Gabi1410g00012 653 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 583 646 IPR013083 -
Gabi1410g00012 653 SMART PHD_3 597 643 IPR001965 -
Gabi1410g00012 653 ProSitePatterns Zinc finger PHD-type signature. 598 642 IPR019786 -
Gabi1410g00012 653 CDD PHD_MMD1_like 597 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1410g00012 Gabi-Chr1410 146762 150054 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1410g00012 10 653 PHD Transcription Factor Family AT5G22260 51.647 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi1410g00012 PHD 5.9e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1410g00012 K26271 - gmx:100780210 1201.42