Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1410g00011 ATGAGCGATCATTTGGTGCTCTTCGTTGACCGTCTCCTGCGCCCTGTGCCCGTTGACCCCGTCGCGCAGCCCGCTCAGCTCCCGTCCGAACCCTCTCCGTCTCCAGCCGCCGCTGCCGGGCCCTCCGGCTCTTCTCCGCCGGCGGATCGAGACGGTGATGCTGTTTTGGAGCGCGGCGAGGATTGTGATGAGGAGGAACCGCTGATCCAGATGGCGGAGTGCCGCATCTGCCAGGAGGAGGACGGCGTTTCCAATTTGGAGACTCCTTGCGCCTGCAGCGGCAGTCTTAAGTATGCTCACAGAAAATGCGTCCAGCATTGGTGCAATGAGAAAGGAGACATAATTTGTGAGATATGTCATCAGCCTTATCAACCTGGGTATACTGCCCCACCACCTCGTCCTAATCCAGATGAAACTACCATTGAAATAGGAGGTGGCTGGACAATAGCTGGCACGCCTTTGGACTTGCGTGATCCTCGACTCTTGGCTATTGCAGAGGCAGAACGTCAATTCTTGGATGCCGAATATGATGAATATGCTGCTTCTAATGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTGATGGCCCTTTTACTTTTGCGGCATGCACTATCTGTCACAGATGGTGATGCTTCTGATGATGATCCATCCAATTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTCTTTTGCCTTGCTATATTATGGCTTGGGCAATCAGTATTCTGCAACGTCGGCGACAAAGACAAGAGGCTGCAGCGCTAGCAGCAACCCAAGTTGCTTTTGTTCTACAATCTGGGCAGCGTAGAGGTTTACAATTTGCGATAGCACCAGGACCCACAGTACAGCAGGAACAAGTGTAG 876 0.5251 MSDHLVLFVDRLLRPVPVDPVAQPAQLPSEPSPSPAAAAGPSGSSPPADRDGDAVLERGEDCDEEEPLIQMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCNEKGDIICEICHQPYQPGYTAPPPRPNPDETTIEIGGGWTIAGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDASDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPTVQQEQV 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1410g00011 291 Pfam Protein of unknown function (DUF3675) 125 244 IPR022143 -
Gabi1410g00011 291 Coils Coil 162 182 - -
Gabi1410g00011 291 ProSiteProfiles Zinc finger RING-CH-type profile. 66 126 IPR011016 GO:0008270
Gabi1410g00011 291 CDD RING_CH-C4HC3_MARCH 74 120 - -
Gabi1410g00011 291 MobiDBLite consensus disorder prediction 21 35 - -
Gabi1410g00011 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 125 IPR013083 -
Gabi1410g00011 291 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 254 IPR033275 -
Gabi1410g00011 291 MobiDBLite consensus disorder prediction 20 54 - -
Gabi1410g00011 291 FunFam RING/FYVE/PHD zinc finger protein 62 130 - -
Gabi1410g00011 291 SMART ringv_2 73 120 IPR011016 GO:0008270
Gabi1410g00011 291 SUPERFAMILY RING/U-box 72 124 - -
Gabi1410g00011 291 Pfam RING-variant domain 74 119 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1410g00011 Gabi-Chr1410 124441 128959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1410g00011 73 149 C3H Transcription Factor Family AT2G37950 34.831 3.87e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1410g00011 - - gmx:100779674 444.506