Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1410g00010 ATGGACTTTACCCCAAACAGCACCATCCAAACCTTAGACACAGATTCTCAAACCCCACCACCGACCAAATCCTCCAACACTGGTTCCAAGTCTTCATCTTTCACCAACGGTTCCCTCAAGCGCCACCACCACCCCACCACCACCGCTCCACCACCGCCAAAGCCACCGTCCACGGTGGTTTTTTACAAAGAGTGCCTCAAGAACCATGCAGCCAGCTTAGGTGGCCACGCACTTGATGGCTGTGGCGAGTTCATGCCCTCCTCTTCATCCAACCCCACTGAACCCCGCTCACTCACGTGCGCCGCATGTGGCTGCCACCGCAACTTCCACCGCCGTGACACACAAGAATACTCCAACAACCACCCCAACTTCATCAGCTTCTACCACTCAACACCACCACCCTCAGCGGCGGCGCCACCACTTCTACCACCACTATCTTACCGTGGACTAAGCCTGAGCACCAGCCCAAGCCTGAGCCCAAGCCCGAGCCCCATGTCAAGCCCATCACCACCACCACTCTCTCATCATTTCCCACCTTCCTATCACCACCACCACCACCACACATCAGCACTCTTATCCCTTGGAAATGCATATTATTCTGATGAGCATCATCATCATCATCAGCATCATCATAGGAGCCTCAACTCTTCAGTGGCTGCTAAGGCAGAGAACCAAAGTGGGAAGAAGAGGCATAGGACCAAGTTCAGCCAAGAACAGAAGGAGAAGATGCATAAATTCTCTGACAAGTTGGGTTGGAGAATCCTCAAAGGGGATGAAGTGTTGGTCCAGGAGTTTTGCAATGACATTGGTGTTTCCAGAGGGGTATTCAAGGTTTGGATGCACAACAATAAGAACTCTTTCAAGAAAAGGTTATCAGAAATGGACAATGCTATGCCAACAAATGCTCCACCTGATGATGAAAAGATCAATGGGGATCTGAATGGCAATGTTGTTGGTGAAATAAATGGCTTTCATAGTGATATTAACAATCCTTACAACAAAACAAACAGTGGCAACAATGACATTCACTTAAATTAA 1038 0.4933 MDFTPNSTIQTLDTDSQTPPPTKSSNTGSKSSSFTNGSLKRHHHPTTTAPPPPKPPSTVVFYKECLKNHAASLGGHALDGCGEFMPSSSSNPTEPRSLTCAACGCHRNFHRRDTQEYSNNHPNFISFYHSTPPPSAAAPPLLPPLSYRGLSLSTSPSLSPSPSPMSSPSPPPLSHHFPPSYHHHHHHTSALLSLGNAYYSDEHHHHHQHHHRSLNSSVAAKAENQSGKKRHRTKFSQEQKEKMHKFSDKLGWRILKGDEVLVQEFCNDIGVSRGVFKVWMHNNKNSFKKRLSEMDNAMPTNAPPDDEKINGDLNGNVVGEINGFHSDINNPYNKTNSGNNDIHLN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1410g00010 345 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 113 IPR006456 -
Gabi1410g00010 345 Pfam ZF-HD protein dimerisation region 60 114 IPR006456 -
Gabi1410g00010 345 NCBIfam homeobox domain, ZF-HD class 228 285 IPR006455 -
Gabi1410g00010 345 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 62 113 IPR006456 -
Gabi1410g00010 345 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 30 286 - -
Gabi1410g00010 345 Gene3D - 213 288 - -
Gabi1410g00010 345 MobiDBLite consensus disorder prediction 224 242 - -
Gabi1410g00010 345 MobiDBLite consensus disorder prediction 151 186 - -
Gabi1410g00010 345 MobiDBLite consensus disorder prediction 161 177 - -
Gabi1410g00010 345 MobiDBLite consensus disorder prediction 1 56 - -
Gabi1410g00010 345 FunFam Zinc-finger homeodomain protein 2 215 289 - -
Gabi1410g00010 345 MobiDBLite consensus disorder prediction 1 43 - -
Gabi1410g00010 345 SUPERFAMILY Homeodomain-like 215 289 IPR009057 -
Gabi1410g00010 345 MobiDBLite consensus disorder prediction 202 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1410g00010 Gabi-Chr1410 107356 110011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1410g00010 60 301 ZF-HD Transcription Factor Family AT1G69600 45.714 3.33e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gabi1410g00010 ZF-HD_dimer 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1410g00010 - - vum:124843063 298.516