Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1410g00005 ATGGAAGAGAGAAATGATGTTGAGAAACTTGATGAAGTTATGTTACCAGGGTTTAGGTTTCATCCAACTGATGAGGAGCTTGTTGGGTTCTATCTCAAGAGAAAAATTCAACAGAGGCCTTTGTCTATTGAGCTCATCAAGCAGCTTGATATCTATAAATATGATCCTTGGGATCTTCCAAAGTTGGCCAGTACAGGAGAGAAAGAGTGGTATTTCTACTGTCCAAGAGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCAGGGTTCTGGAAAGCTACAGGGACTGATAGGCCTATTTACTCCTCAGAAGGTTCCAAGTGTATTGGCCTTAAGAAATCCTTAGTCTTTTACAAAGGCAGAGCTGCCAAAGGAGTAAAAACTGATTGGATGATGCATGAGTTCAGGTTACCTTCTCTCACTGACTCACTATCCCCAAAGAAGTTCATAGACAAGACCATTCCAGTTAATGAATCTTGGGCAATCTGCAGGATATTCAAGAAAACCAATTCTACAGCTCAGAGAGCTGTGTCACACTCTTGGGTCTCTTCAATACCTGAAACAAGAACCTCTGATATGCTAACCCAAAATCAGGAAATCACCCAGTTTTGTTCAGGCAACATGCCATTGACAAAGAAAACTAGCTTAGCCAACCAGTTCTGTATTAACAACTGTGATATCCAACACTTAACCACTAATAGTAGTACTCTTTGTCCTTTAGATATTGCCTCTTATAAATCCATTATTAACCCGTTGCTTTACAAAGCCTTTGATCATTTGCCAATACCTAATAATGGAGACCTTAGCACTAGCATGATATTCTCATCTCCACTTGAAACATGTAATACTAATGCAAAATCCACAATGGATATTTCATCCATGTTGTTGAATATGTCATCCTCAGTGCTTGGAGATTTTAGTAAGACCAATGAGGACACAACTACAAACTATGGTGGTGGGTTGCAAGAGCACTGTAATAGCTATCCAATTCCATTTCTACGTGAGATGCAAGCCACATTTGGAAACCAATATGATAATGCATTGGTAAAGGTAGCTAATGTGAACATGCCTCGTGTTGATGACCAAGAGTTGGAGACAGTAGTACCATCCATTGGTTTTCCTTTCAATATTGGCGATGCATGGAAGTCAAATCTGCTTTGGGATGATTCATCTTGTCCTTGTGATGTGCCCTCTAGTTATTCCACAACCAAGTGCTATACTTAA 1236 0.3989 MEERNDVEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSLSPKKFIDKTIPVNESWAICRIFKKTNSTAQRAVSHSWVSSIPETRTSDMLTQNQEITQFCSGNMPLTKKTSLANQFCINNCDIQHLTTNSSTLCPLDIASYKSIINPLLYKAFDHLPIPNNGDLSTSMIFSSPLETCNTNAKSTMDISSMLLNMSSSVLGDFSKTNEDTTTNYGGGLQEHCNSYPIPFLREMQATFGNQYDNALVKVANVNMPRVDDQELETVVPSIGFPFNIGDAWKSNLLWDDSSCPCDVPSSYSTTKCYT 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1410g00005 411 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 250 - -
Gabi1410g00005 411 SUPERFAMILY NAC domain 13 172 IPR036093 GO:0003677|GO:0006355
Gabi1410g00005 411 ProSiteProfiles NAC domain profile. 14 172 IPR003441 GO:0003677|GO:0006355
Gabi1410g00005 411 FunFam NAC domain-containing protein 35 23 175 - -
Gabi1410g00005 411 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Gabi1410g00005 411 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1410g00005 Gabi-Chr1410 71231 72725 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1410g00005 1 311 NAC Transcription Factor Family AT1G26870 56.173 1.74e-110 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi1410g00005 NAM 4.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1410g00005 - - gmx:100783995 640.188