Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1409g00006 ATGGATGAGGTCAGAACTTGTAATGAAGCGGAGCAGCCTCAGTCCAAAGACTTGGCCGCTGCGGCCGCCACCACCGCCGCCGCATCGTCTTCGGGATGGCGTCCTGGTCGGCTTGCGTTTGCTCCGTGGGTGCCACAGGGTGAAGAAGCTACTGCTGATAAGTCCCAGAAATTGCGTTTGGTTGTCAGGAAACCCTTGGTGGCAAGATTGACCAAGGAAATAGTTGAAACATACCAAATATGCAATCCACAGTTTAAATATTCTGAAGATCTAAATCCCAAAAGATTTTTGACCAGCCCGTCTATTGGAGTGCTTAATGATGGCTATGATAATGTAAACTCAGATCTTATCCTGACAGTGAATTTCGTCTTGATCCATTTAGAGAAAAATAGAAGATATATTGTCAAAGATGTCCTTGGCCATGGGACATTTGGACAAGTGGCTAAATGCTGGGATTCAGATACCAACAGTTTTGTTGCTGTCAAGATCATTAAAAATCAACCTGCTTACTATCAACAGGCACTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAGTATGATCCCGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTATATCAACGACATTTGTGCATATGCTTTGAACTGCTGGACACAAACTTGTATGAGCTTATCAAGATGAATCATTTTAGGGGATTATCACTTGGTATTGTTCAGCTGTTCTCTAAGCAGATTTTATGTGGACTGGCTCTATTAAAAGATGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACGAGCACTGTGAAGCCAGCAGAAATCAAGATAATTGACTTTGGATCCGCATGCATGGAAAACCGCACTGTTTACTCCTATATTCAGAGTCGATACTACAGATCTCCTGAAGTTCTCCTTGGATATCAGTACACAACAGCTATTGATATGTGGTCCTTTGGGTGCATAGTTGCTGAATTATTTCTTGGATTACCATTATTCCCTGGTGCTTCGGAATTTGATCTTTTGAGGCGGATGATTGAAATACTCGGAGGACAACCACCTGATTATCTACTGAGAGATGCCAAAAACACAAGTAAATTCTTTAAATGTATCGGGAGTCTCCAAAATATAGAGAACAGTGAGAGTTCCAGAAAAGGAAGAAGTGTTTATCAGGCATTGACGGAGGAAGAATATGAAGCTAGAGATTTGAAGAAGCCATCAATTGGAAAGGAGTATTTTAATCATATGAACCTTGAAGCAATCGTTACAAACTATCCGTTCAGGAAAAATCTACCAAAGGAAGATATTGTCAAAGAAAGTCAAATACGATTGGCTCTTATTGATTTTTTGAGAGGTCTAGTGGAATTGGATCCTGCAAAGCGCTGGTCACCCTTCCAGGCTTCAAAACACCCTTTTATAACCGGGGAACCTTTTACACACCCTTACAAGCCTCCTCCGGAGACCCCTCACATG 1482 0.4096 MDEVRTCNEAEQPQSKDLAAAAATTAAASSSGWRPGRLAFAPWVPQGEEATADKSQKLRLVVRKPLVARLTKEIVETYQICNPQFKYSEDLNPKRFLTSPSIGVLNDGYDNVNSDLILTVNFVLIHLEKNRRYIVKDVLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKDAGIIHCDLKPENILLCTSTVKPAEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMIEILGGQPPDYLLRDAKNTSKFFKCIGSLQNIENSESSRKGRSVYQALTEEEYEARDLKKPSIGKEYFNHMNLEAIVTNYPFRKNLPKEDIVKESQIRLALIDFLRGLVELDPAKRWSPFQASKHPFITGEPFTHPYKPPPETPHM 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1409g00006 494 PANTHER DUAL SPECIFICITY PROTEIN KINASE 59 479 - -
Gabi1409g00006 494 SMART serkin_6 133 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1409g00006 494 Gene3D Phosphorylase Kinase; domain 1 98 213 - -
Gabi1409g00006 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Gabi1409g00006 494 CDD PKc_YAK1 133 476 - -
Gabi1409g00006 494 ProSiteProfiles Protein kinase domain profile. 133 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1409g00006 494 SUPERFAMILY Protein kinase-like (PK-like) 127 492 IPR011009 -
Gabi1409g00006 494 MobiDBLite consensus disorder prediction 1 21 - -
Gabi1409g00006 494 FunFam Dual specificity tyrosine-phosphorylation-regulated kinase 1A 96 212 - -
Gabi1409g00006 494 Gene3D Transferase(Phosphotransferase) domain 1 214 477 - -
Gabi1409g00006 494 ProSitePatterns Protein kinases ATP-binding region signature. 139 162 IPR017441 GO:0005524
Gabi1409g00006 494 Pfam Protein kinase domain 134 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1409g00006 Gabi-Chr1409 194673 223445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1409g00006 132 362 MAP Kinase Gene Family AT3G18040 34.711 5.19e-32 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-YAK Gabi1409g00006 Pkinase 3.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1409g00006 K18670 - gmx:100786931 883.248