Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1406g00005 ATGAAGAGTTTTCTAGGCTGTATAGCGATCTTGGAGAAAAATAAAACTTATGTTGCAATGCTCTTCATTCAGTTTATATATGCAGGATTGGCTTTGTTGTCTAAGGCAGCAATTTCCAAGGGAATGAACCCTTATGTGTTTGTTGTTTATCGACAAGCTTTTGCATCACTTGCCTTATCTCCATTTGCTTTCTTTGACAGTAAGCATGCTGCTCCATTGTCATGCAACTTATTGTGCAAATTGTTTCTAGTTTCCCTAGTTGGGTTAACAGCAAGTTCAAACCTTTACTATGTTGCAATCAACTATACCTCTGCAACATTTGCTGCAGCCTCCACAAATACAGTCCCTGCTATTACTTTTATCATGGCTGTTTTAATTAGGGTGGAAAGCATTTCCATAAAAAATCTGCATGGGGTTGCCAAGATTTTGGGTTCTGTTCTAAGCCTTTCTGGGGCAATAACATTTGCTTTAGTCAAAGGACCTCCTTTAGATTTCATAAGGTGGAATCCAGAAGACCAAAAGCATGTTTCTCACCCATTAACAACAGTTCACTCCAAAGGGAATAGTATTAGAGGCTCTCTTATGATGCTCTCAGCAAACACTACTTGGTCCTTATGGCTTATTTTGCAGGGATTTATTGTAAAGCAATACCCAGCAAAATTTCGTCTCACTGCTCTACAATGCTTCTTTAGCTTCATACAGTCAGCTATTTTGGCTGTTGCAATGGAGAGCAATCCTTCAGCATGGAGGCTTGGATGGGATATTCATCTTCTTTCAGTGGCATACTGTGGTGTAATTGTAACAGGCATTTGTTATTGGCTGCAAGTCTGCACTATTGAGACGAAAGGCCCAGTTTTCACAGCAATGTTCACCCCTCTAGCTCTTATAATCACAGCAATATTCTCAGCCCTATTGTGGAAAGAATCTATTTACTTGGGAAGTATTGGTGGCACTGTTTTGTTGGTGGTTGGACTCTACAGCGTCTTGTGGGGAAAGAACAAGGAAAGTGTAAATAGGGAAAACTATGAAGCTGAACATGCAAAAGAGGAAACCAGATTGGAGTGCATTATACAGCACTGA 1080 0.4009 MKSFLGCIAILEKNKTYVAMLFIQFIYAGLALLSKAAISKGMNPYVFVVYRQAFASLALSPFAFFDSKHAAPLSCNLLCKLFLVSLVGLTASSNLYYVAINYTSATFAAASTNTVPAITFIMAVLIRVESISIKNLHGVAKILGSVLSLSGAITFALVKGPPLDFIRWNPEDQKHVSHPLTTVHSKGNSIRGSLMMLSANTTWSLWLILQGFIVKQYPAKFRLTALQCFFSFIQSAILAVAMESNPSAWRLGWDIHLLSVAYCGVIVTGICYWLQVCTIETKGPVFTAMFTPLALIITAIFSALLWKESIYLGSIGGTVLLVVGLYSVLWGKNKESVNRENYEAEHAKEETRLECIIQH 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1406g00005 359 Pfam EamA-like transporter family 17 149 IPR000620 GO:0016020
Gabi1406g00005 359 Pfam EamA-like transporter family 191 329 IPR000620 GO:0016020
Gabi1406g00005 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 149 - -
Gabi1406g00005 359 PANTHER WAT1-RELATED PROTEIN 17 342 IPR030184 GO:0016020|GO:0022857
Gabi1406g00005 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1406g00005 Gabi-Chr1406 144449 149592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1406g00005 1 336 Nodulin-like Gene Family AT5G07050 38.192 9.51e-84 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1406g00005 - - gmx:100800562 587.8