Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1406g00004 ATGTCCTTCCGCAGTATTGTTCGTGATGTAAAGGATGGATTTGGAAGCTTATCATGGCGGAGTTCTGAGGTGAGGCTTCCTGGCCACATGGGCAAGTCACATAGTTCTGTTCATGAATTACAGGAACAGCCGCCAGTGATACAGAACAGTGAGTGGGCTAATCTTCCAACTGAGCTTCTTCGCGAGGTTATTATAAGATTGGAAGCAAGTGAGAGTAAATGGCCTGCTCGTAAACATGTGGTTGCATGTGGTGCTGTGTGCAAGTCATGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCCTGAGTTAAGTGGGAAGATTACTTTTGCTGTCTCCCTGAAGCAGCCTGGTGCTAGGGATGGAACCATGCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACTTACCACCTATACCTTTGTCTTAGTACTACCTTGCTAATTGAAAATGGAAAGTTTCTTCTTTCTGCCAAACGGACCAGAAGAACGACCTGCACAGAGTACATTATATCAATGGATGCAGATAATATATCAAGATCTAGTAGCACTTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAATTTATAATATATGATACACAGCCACCCTATAACAATTCTCAGCTGTCTCCTCCAGGCCGCAGCCGCAGGTTTAATTCAAAGAAGATTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATTTCCCATATCAACTATGAGTTGAATGTCCTTGGTACTAGGGGCCCACGCAGGATGCACTGCACCATGCACTCAATCCCTACATCAGCCCTTGAGCCTGGTGGCATTGTTCCAGGCCAACCGGAGCTCCTTCCACGCACCCTTGAGGATTCCTTCCGGAGCATATCCTTCTCAAGATCCATTCACAACTCAACTGAGTTTAGCAGCTCTAGGTTCTCCGACATAATCGGCACTGGCAGTGGTGAGGAGGTGAAAGACAGGCCTCTAGTTCTTAAGAACAAAGCACCAAGATGGCATGAGCAGCTGCAATGTTGGTGTCTCAACTTCAAGGGAAGGGTGACTGTTGCCTCTGTCAAGAATTTTCAGCTGATTGCTGCAACACAGCCTTCAGGCACTGGTCCTACATCATCTCAGCCAGGTCCTACATCATCTCAGCCAACACAATCTGACCATGACAAGGTTATTCTTCAGTTTGGTAAGGTTGGCAAGGATATGTTCACTATGGACTATACATATCCACTATCTGCATTTCAGGCTTTTGCAATTTGCTTGACAAGTTTTGACACAAAACTGGCATGTGAATAG 1290 0.4512 MSFRSIVRDVKDGFGSLSWRSSEVRLPGHMGKSHSSVHELQEQPPVIQNSEWANLPTELLREVIIRLEASESKWPARKHVVACGAVCKSWREMCKEIVSSPELSGKITFAVSLKQPGARDGTMQCFIKRDKSNLTYHLYLCLSTTLLIENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNSQLSPPGRSRRFNSKKISPKVPSGSYNISHINYELNVLGTRGPRRMHCTMHSIPTSALEPGGIVPGQPELLPRTLEDSFRSISFSRSIHNSTEFSSSRFSDIIGTGSGEEVKDRPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLIAATQPSGTGPTSSQPGPTSSQPTQSDHDKVILQFGKVGKDMFTMDYTYPLSAFQAFAICLTSFDTKLACE 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1406g00004 429 ProSitePatterns Tub family signature 2. 414 429 IPR018066 -
Gabi1406g00004 429 MobiDBLite consensus disorder prediction 207 229 - -
Gabi1406g00004 429 Gene3D Tubby Protein; Chain A 111 423 IPR025659 -
Gabi1406g00004 429 SUPERFAMILY Tubby C-terminal domain-like 101 429 IPR025659 -
Gabi1406g00004 429 CDD F-box_AtTLP-like 52 96 - -
Gabi1406g00004 429 Pfam Tub family 113 424 IPR000007 -
Gabi1406g00004 429 PANTHER TUBBY-RELATED 36 427 - -
Gabi1406g00004 429 Pfam F-box domain 52 99 IPR001810 GO:0005515
Gabi1406g00004 429 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Gabi1406g00004 429 MobiDBLite consensus disorder prediction 362 386 - -
Gabi1406g00004 429 FunFam Tubby-like F-box protein 47 100 - -
Gabi1406g00004 429 SUPERFAMILY F-box domain 44 95 IPR036047 GO:0005515
Gabi1406g00004 429 FunFam Tubby-like F-box protein 109 429 - -
Gabi1406g00004 429 Gene3D - 51 97 - -
Gabi1406g00004 429 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Gabi1406g00004 429 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Gabi1406g00004 429 PRINTS Tubby superfamily signature 386 405 IPR000007 -
Gabi1406g00004 429 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Gabi1406g00004 429 PRINTS Tubby superfamily signature 407 429 IPR000007 -
Gabi1406g00004 429 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Gabi1406g00004 429 PRINTS Tubby superfamily signature 344 360 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1406g00004 Gabi-Chr1406 79724 87948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1406g00004 1 429 TUB Transcription Factor Family AT1G76900 67.102 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gabi1406g00004 Tub 2.5e-116 CL0395