Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1403g00007 ATGAATGTTAGGAGGAGACTTACAATCATGGGTGCTCCCCAAACTGCAACAAGCCCTCCTCCTCAACTCTATCCTCAGGAACTTCAGCTTAAGCTTTACCAGGCCTTCATTTTCTCAATTCCCATACTCTTTTCCATTATTCTCTTTCTCCTATTTTACTTGTTCTACCTCAAGAGAAGGGCTTCCTCTCTCTCATCCTCTTCTCCACACTTACTTCCAAGGATTTCATATCCACCAACTACTTATCACTATCATTCCTCACCTTGCCGTTTGGATCTGACCCTGCAATTTCTGGAAAAACTTCCAAGAGTTTTATTTGATGAAGATTTGCGAGCAAGGGATTCACTATGTTGTGTTTGTCTGGGAGAATTTGAGATGAAAGAAGAGGTGCTACAGATTCCTTATTGCAAGCATGTGTTCCACATTGATTGCATACATCACTGGCTACAATCAAACTCAACTTGTCCACTTTGCAGATGTTCCATCATCCCCACTATCAAGTTCCTTAATCCAACTCCACCTATTAATATTATATCAGACCCACCCCAGCAAGGTGCTATCATTTCAGACTCTCCATTACAAATTCTATCATTGCCACCTCAACCAGAAGATGAAGCTGGTGCTTCCTCAAATAATGTGAATTTGTCAAGGGAATGA 657 0.4125 MNVRRRLTIMGAPQTATSPPPQLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSPHLLPRISYPPTTYHYHSSPCRLDLTLQFLEKLPRVLFDEDLRARDSLCCVCLGEFEMKEEVLQIPYCKHVFHIDCIHHWLQSNSTCPLCRCSIIPTIKFLNPTPPINIISDPPQQGAIISDSPLQILSLPPQPEDEAGASSNNVNLSRE 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1403g00007 218 MobiDBLite consensus disorder prediction 198 218 - -
Gabi1403g00007 218 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Gabi1403g00007 218 MobiDBLite consensus disorder prediction 204 218 - -
Gabi1403g00007 218 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 174 - -
Gabi1403g00007 218 CDD RING-H2_EL5-like 117 159 - -
Gabi1403g00007 218 SUPERFAMILY RING/U-box 95 169 - -
Gabi1403g00007 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 164 IPR013083 -
Gabi1403g00007 218 Pfam Ring finger domain 117 159 IPR001841 -
Gabi1403g00007 218 SMART ring_2 117 158 IPR001841 -
Gabi1403g00007 218 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 86 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1403g00007 Gabi-Chr1403 198531 201629 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1403g00007 18 164 C3H Transcription Factor Family AT4G10150 39.474 3.68e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1403g00007 K19039 - gmx:100813129 302.367