LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1400g00002	ATGCACAAGAAGCGGAGGAAACGTGAGAGTAAGGATATGAGGATTAATCGTGATCAGGATGAGAGAGAACCTGATCATATAAATGCTCAACAATTTCTTGAGCGCTTTCATGAGAAAAAGAAATCTGTCAAGAAAGCTGAAGGTTTTGGGTTGGCTTCAGACTTTTCTTCTAAGGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCATTCAGTTTCTTTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTCATAATTTTTTCGTCAGTGAAATAATAAAAAGGAATGAATTGCAAAATTTGGTAACCGATTTACTTGGAAAGCATCTTGATCTTATGGTGGAATTCAATGATTTCCTGGAGTGTTTGGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTAAGATCATCAAAGTTGGAGGACAAAGACAAAGACAAAGAGCAGAAGCACTCAGCTGGTTCCTACAAGAGTAGGGTGGCGGGTTTTGCCACTGCTCCTCCTTGTGGGACATTGTCTCTGATGACCGCGGGAAGAGGCCTAAAGAGGAAGATAGGTTGCATTGACGTGGCTACCCAGATGGGGAGGAAGAACAAGATTGAAGATGATTATGTTACTGGGGTGAGGATCGGGCAAGGAAAGTATGGATCTGTTTCGTTGTGTAGGTCTCTTGTTGGCGGCGCGGAGTATGCGTGTAAGACTCTGAAGAAGGGGGATGAGACTGTTTACAGGGAGGTGGAGATAATGCAGCACTTGTCTGGGCATCCTGGGGTTGTGACTCTGCTGGCAGTGTATGAGGAAGCTGATTGCTCTCATCTGGTGATGGAATTGTGCTCTGGGGGAAGACTTGTCGACCAGATGTTTAGGGAGGGCCCTTGTTCTGAACAGCGGGCTGCTAATATACTTAAGGAAGTGATGTTGGTCATCAAGTATTGTCATGATATGGGAGTTGTGCACAGAGATATCAAGCCTGAGAATATTCTGCTTACTGCTTCGGGGGAAATAAAGCTTGCTGATTTTGGCCTGGCCATGAGAATTTCTAAGGGTCAGAACTTGACGGGTTTGGTTGGGAGCCCTGCATATGTTGCACCAGAAGTGTTGTTGGGTAGATACTCAGAAAAGGCGGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGGTTGGTGTTCTTCCATTTAAAGGGGATTCACAAGAAGCAGTTTTTGAGGCTATTAAGAATTCCAAGCTAGAGTTCCAAACCGGGATGTGGGAATCAATATCTAAACCTGCACGAGATCTTGTTGGGAGAATGCTGACAAGGGATATTTCAGCAAGGATAACAGCTGATGAAGTACTTAGACATCCATGGATATCTTTCTACACAGAACGTACATTGAAGATCCTGCCCGTTGAATCAAAGTTGAAGCACCAAAATGGAGCTGCTTGCCACAACTTTGTTGCTGCACCTGAACCTAGGTTAGGAAGAAACAGGATGGATGATGGGTTCCTTAATGAGGTTTCAAGCCTTTCTTCATCATCTGAAAGTTGCAATTCAGAATATCATGATGTTTGTGTGTGGATTGATGCACTTGCCAATGCAATTTCACATGTAAGGATATCTGAACCAAAGAAGAGCAAGTTGTGGGCAGTTCCAATTCATCAACAAGGTTTATATAACATGAGGGCTAACCTCTGTAAAGCATTTTGA	1737	0.4335	MHKKRRKRESKDMRINRDQDEREPDHINAQQFLERFHEKKKSVKKAEGFGLASDFSSKEDKDTLKNMYSQAFSFFEKVKEKLNSADDYQAFLKCLHNFFVSEIIKRNELQNLVTDLLGKHLDLMVEFNDFLECLENIDGFLAGVMSKKSLRSSKLEDKDKDKEQKHSAGSYKSRVAGFATAPPCGTLSLMTAGRGLKRKIGCIDVATQMGRKNKIEDDYVTGVRIGQGKYGSVSLCRSLVGGAEYACKTLKKGDETVYREVEIMQHLSGHPGVVTLLAVYEEADCSHLVMELCSGGRLVDQMFREGPCSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTASGEIKLADFGLAMRISKGQNLTGLVGSPAYVAPEVLLGRYSEKADIWSAGVLLHALLVGVLPFKGDSQEAVFEAIKNSKLEFQTGMWESISKPARDLVGRMLTRDISARITADEVLRHPWISFYTERTLKILPVESKLKHQNGAACHNFVAAPEPRLGRNRMDDGFLNEVSSLSSSSESCNSEYHDVCVWIDALANAISHVRISEPKKSKLWAVPIHQQGLYNMRANLCKAF	578

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1400g00002	578	CDD	STKc_CAMK	218	466	-	-
	Gabi1400g00002	578	Gene3D	Paired amphipathic helix	62	135	IPR036600	GO:0006355
	Gabi1400g00002	578	ProSitePatterns	Protein kinases ATP-binding region signature.	225	248	IPR017441	GO:0005524
	Gabi1400g00002	578	ProSiteProfiles	PAH domain profile.	64	134	IPR003822	GO:0006355
	Gabi1400g00002	578	ProSiteProfiles	Protein kinase domain profile.	219	467	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1400g00002	578	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	332	344	IPR008271	GO:0004672\|GO:0006468
	Gabi1400g00002	578	SUPERFAMILY	PAH2 domain	65	132	IPR036600	GO:0006355
	Gabi1400g00002	578	FunFam	Maternal embryonic leucine zipper kinase	211	488	-	-
	Gabi1400g00002	578	Pfam	Paired amphipathic helix repeat	86	131	IPR003822	GO:0006355
	Gabi1400g00002	578	SUPERFAMILY	Protein kinase-like (PK-like)	213	503	IPR011009	-
	Gabi1400g00002	578	Pfam	Protein kinase domain	220	467	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1400g00002	578	FunFam	Paired amphipathic helix protein SIN3	61	136	-	-
	Gabi1400g00002	578	PANTHER	SERINE/THREONINE-PROTEIN KINASE	206	491	-	-
	Gabi1400g00002	578	MobiDBLite	consensus disorder prediction	1	27	-	-
	Gabi1400g00002	578	SMART	serkin_6	219	467	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1400g00002	578	MobiDBLite	consensus disorder prediction	11	27	-	-
	Gabi1400g00002	578	Gene3D	Transferase(Phosphotransferase) domain 1	210	502	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1400g00002	Gabi-Chr1400	17092	22036	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1400g00002	209	467	EF-hand Containing Proteins	AT4G35310	44.444	6.44e-77	252

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Gabi1400g00002		Pkinase	1.5e-67	CL0016
	TR	Others	Gabi1400g00002		Pkinase	1.5e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1400g00002	-		-	gmx:100812729	624.009