Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi13g00006 ATGGATTCCGACTTCCCCAACAAAGCATTAACCAGTACACGTTTTTCTGATCTTGAACCACCACTTTCTGAACCGGTTCTCCAAGCCCTATCCGGTTCAGGGTTCGAGTTCTGCACACCGGTTCAAGCCGCTACGATCCCTTTGCTATGCAGCTTCAAGGACGTTTCCGTTGACGCCGCCACCGGTTCAGGAAAAACCCTAGCTTTTGTTGTTCCGCTGGTTGAGATTCTACGCCGCTCTTGTTCTCATCCTAAGCCTCATCAGGTACTAGGGATAATTATATCGCCTACAAGGGAGCTATCTTCCCAAATATATCATGTTGCACAACCTTTCATATCAACCTTAGTGAATGTTAAGTCCATACTCCTCGTTGGTGGGGCAGAAGTTAAAGCAGACATGAAGAAAATAGAGGAAGAAGGAGCAAACATATTAATTGGCACCCCTGGGCGGCTATTTGACATAATGAATCGGATGGATGTTTTGGATTTTAAAAACTTTGAGATTTTGATTTTGGATGAGGCTGATAGACTCTTAGATATGGGATTTCAAAAGCAGATAACTTCCATTATATCTCTCTTGCCTAAGCTTCGTAGAACTGGGCTATTCTCTGCTACTCAAACTGAGGCTGTTGAAGAGCTTTCTAAAGCAGGATTGAGGAACCCTGTGAGGGTTGCAGTTCGGGCAGAAACAAAAACAGAAAATGATCCTGGAACATCAAAACAACTAGAGTCTTCAAAGACACCTTCAGGACTTCACATTGAGTACTTGGAATGCGAGGCAGATAAGAAGCCATCACAGCTAGTAGATATCCTTATTAAGAACCGCTCAAAAAAAATTATAATATATTTCATGACTTGTGCTTGTGTTGACTATTGGGGAGTTGTCCTTCCTCGCCTTTCTATTTTAAAAGGGTTCTCCTTGATCCCCCTTCATGGAAAAATGAAGCAGACTGTCAGGGAGAAAGCATTAGCTTCATTTACGTCTCTTTCAAATGGAATTCTTCTATGTACAGATGTTGCAGCACGTGGACTTGACATACCTGGTGTAGATTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAATGTTTTCGTGCATAGAGTTGGTCGAACTGCTCGGCTGGGTAAACAAGGACATGCTGTTGTCTTTTTATTGCCAAAGGAGGAATCTTATGTAGAATTCCTGCGTATAAGAAGAGTTCCTCTTCAAGAGGGAAGCTGCTCTGATGATGCACCTGATGTTGTTCCTCAGATTCGTTCTGCTGCAAAAAAAGATCGCGATGTCATGGAGAAGGGAGTCAGGGCATTTGTTTCTTACATCCGAGCTTATAAAGAGCATCACTGCTCTTATATATTTAGGTGGAAAGAACTTGAAATTGGCAAATTGGCCATGGGATGCGGCTTATTGCAACTTCCTTTAATGCCAGAGGTAAAACACCACTCACTTTCCACTGAAGGATTTGTACCAGTTAAAGATATCAATTTGGAGGACATCAAGTTCAGGGATAAATCACGAGAGAAACAGAGGAAGAAGAACCTAAAAGCAAAGAAAGAAGCCAAAGAGAAAGAGCAAAAACCTCAAAAACTAAGCAAAACCCCAAATGCACCTACCGTCACGAGGAAGAAAACAGCCCGACAGAGACGTGCTCAGCAGACAGTTGAAGATGAGGAAGAGTTGATGCAAGAATACCGCTTGTTGAAGAAATTGAAGAAAGGGACCATAGACGAGAATGAATATGCCAAGTTGACAGGCACTGAGGAATTACTACTATGA 1773 0.4247 MDSDFPNKALTSTRFSDLEPPLSEPVLQALSGSGFEFCTPVQAATIPLLCSFKDVSVDAATGSGKTLAFVVPLVEILRRSCSHPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNVKSILLVGGAEVKADMKKIEEEGANILIGTPGRLFDIMNRMDVLDFKNFEILILDEADRLLDMGFQKQITSIISLLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVAVRAETKTENDPGTSKQLESSKTPSGLHIEYLECEADKKPSQLVDILIKNRSKKIIIYFMTCACVDYWGVVLPRLSILKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQEGSCSDDAPDVVPQIRSAAKKDRDVMEKGVRAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGCGLLQLPLMPEVKHHSLSTEGFVPVKDINLEDIKFRDKSREKQRKKNLKAKKEAKEKEQKPQKLSKTPNAPTVTRKKTARQRRAQQTVEDEEELMQEYRLLKKLKKGTIDENEYAKLTGTEELLL 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi13g00006 590 MobiDBLite consensus disorder prediction 504 557 - -
Gabi13g00006 590 CDD DEADc_DDX55 26 224 - -
Gabi13g00006 590 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Gabi13g00006 590 Gene3D - 3 227 IPR027417 -
Gabi13g00006 590 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Gabi13g00006 590 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Gabi13g00006 590 Gene3D - 254 481 IPR027417 -
Gabi13g00006 590 SMART ultradead3 34 234 IPR014001 -
Gabi13g00006 590 CDD SF2_C_DEAD 254 384 - -
Gabi13g00006 590 Coils Coil 546 566 - -
Gabi13g00006 590 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Gabi13g00006 590 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Gabi13g00006 590 PANTHER RNA HELICASE 12 517 - -
Gabi13g00006 590 SMART helicmild6 290 375 IPR001650 -
Gabi13g00006 590 FunFam RNA helicase 9 227 - -
Gabi13g00006 590 Coils Coil 503 525 - -
Gabi13g00006 590 Pfam Domain of unknown function (DUF4217) 416 473 IPR025313 -
Gabi13g00006 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Gabi13g00006 590 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Gabi13g00006 590 SMART DUF4217_3 413 476 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi13g00006 Gabi-Chr13 64313 69311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi13g00006 22 389 Eukaryotic Initiation Factors Gene Family AT3G13920 30.894 8.42e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi13g00006 K14809 - gmx:100801482 1026.16