Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi13g00004 ATGGGTGGGAATTCCCCATGTGCTTCATGCAAGCTTCTGAGACGCCGGTGCACCCAAGATTGCATCTTTGCTCCTTATTTCCCTTCTGATGACCCACAAAAGTTTGCCAGAGTTCACAAGGTTTTTGGTGCTAGCAACGTTAGCAAAATGTTACAGGAACTTCCAGTTCATAAGAGAGCAGATGCAGTGAGCAGTTTAGTGTATGAAGCACATGCAAGAGTGAGGGACCCAGTGTATGGTTGTGTTGGAGTCATATCCTACTTGCAAAACCAGGTTTCTGAGCTTCAAATGCAGCTTGCAGTTGCTCAAGCAGAGATGCTCTGCATCCAGATGCAACATGAGCCTGGAATGCCCAATAATCCACAAATGGACACAGATCATAAACCTTGCCTTCAACAAAATGACCTCCCTCAGTACCTTGACTTTGCCTCTTCTAGCAATGTAATTCATGATTCTCTCACAAGAGAGACCATATTTGGACATGACATGGTTACTTAA 498 0.4458 MGGNSPCASCKLLRRRCTQDCIFAPYFPSDDPQKFARVHKVFGASNVSKMLQELPVHKRADAVSSLVYEAHARVRDPVYGCVGVISYLQNQVSELQMQLAVAQAEMLCIQMQHEPGMPNNPQMDTDHKPCLQQNDLPQYLDFASSSNVIHDSLTRETIFGHDMVT 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi13g00004 165 Coils Coil 85 105 - -
Gabi13g00004 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 125 - -
Gabi13g00004 165 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Gabi13g00004 165 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi13g00004 Gabi-Chr13 40839 41444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi13g00004 3 131 AS2 family AT2G30130 79.545 3.11e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi13g00004 LOB 6.8e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi13g00004 - - gmx:121173085 285.804